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Date:      Mon, 8 Jul 2019 19:01:30 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][math/py-igakit] Failed for py27-igakit-0.1_3 in build
Message-ID:  <201907081901.x68J1ULu008257@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q3/math/py-igakit/Makefile 499638 2019-04-22 13:16:33Z gerald $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/505943/logs/py27-igakit-0.1_3.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=505943
Log:

=>> Building math/py-igakit
build started at Mon Jul  8 19:00:45 UTC 2019
port directory: /usr/ports/math/py-igakit
package name: py27-igakit-0.1_3
building for: FreeBSD 120armv7-quarterly-job-06 12.0-RELEASE-p7 FreeBSD 12.0-RELEASE-p7 1200086 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q3/math/py-igakit/Makefile 499638 2019-04-22 13:16:33Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300031
Jail OSVERSION: 1200086
Job Id: 06

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MAKE_ARGS= FLAVOR=py27
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--MAINTAINER--
yuri@FreeBSD.org
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--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

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--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7  PYTHON_LIBDIR=lib/python2.7  PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  PYTHON_VER=2.7  PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/igakit"  EXAMPLESDIR="share/examples/igakit"  DATADIR="share/igakit"  WWWDIR="www/igakit"  ETCDIR="etc/igakit"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/igakit DOCSDIR=/usr/local/share/doc/igakit EXAMPLESDIR=/usr/local/share/examples/igakit  WWWDIR=/usr/local/www/igakit ETCDIR=/usr/local/etc/igakit
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=======================<phase: check-sanity   >============================
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-igakit-0.1_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120armv7-quarterly-job-06] Installing pkg-1.11.1...
[120armv7-quarterly-job-06] Extracting pkg-1.11.1: .......... done
===>   py27-igakit-0.1_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-igakit-0.1_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-igakit-0.1_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-igakit-0.1_3 for building
=> SHA256 Checksum OK for igakit-0.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
				Block: InsertKnot
				Block: RemoveKnot
				Block: Clamp
				Block: Unclamp
				Block: RefineKnotVector
				Block: DegreeElevate
				Block: Extract
				Block: Evaluate0
				Block: Evaluate1
				Block: Evaluate2
				Block: Evaluate3
				Block: Gradient1
				Block: Gradient2
				Block: Gradient3
				Block: Hessian1
				Block: Hessian2
				Block: Hessian3
				Block: ThirdDer1
				Block: ThirdDer2
				Block: ThirdDer3
				Block: FourthDer1
				Block: FourthDer2
				Block: FourthDer3
			Block: iga
				Block: KnotVector
				Block: GaussLegendreRule
				Block: GaussLobattoRule
				Block: BasisData
				Block: Greville
				Block: BasisDataCol
Building modules...
	Building module "igalib"...
		Constructing F90 module support for "bsp"...
			Constructing wrapper function "bsp.FindSpan"...
			  span = FindSpan(p,U,u)
			Constructing wrapper function "bsp.FindMult"...
			  mult = FindMult(p,U,u,[span])
			Constructing wrapper function "bsp.FindSpanMult"...
			  span,mult = FindSpanMult(p,U,u)
			Constructing wrapper function "bsp.EvalBasisFuns"...
			  N = EvalBasisFuns(p,U,u,[span])
			Constructing wrapper function "bsp.EvalBasisFunsDers"...
			  dN = EvalBasisFunsDers(p,U,u,[d,span])
			Constructing wrapper function "bsp.SpanIndex"...
			  I = SpanIndex(p,U)
			Constructing wrapper function "bsp.Greville"...
			  X = Greville(p,U)
			Constructing wrapper function "bsp.InsertKnot"...
			  V,Qw = InsertKnot(p,U,Pw,u,[r])
			Constructing wrapper function "bsp.RemoveKnot"...
			  t,V,Qw = RemoveKnot(p,U,Pw,u,TOL,[r])
			Constructing wrapper function "bsp.Clamp"...
			  V,Qw = Clamp(p,U,Pw,[l,r])
			Constructing wrapper function "bsp.Unclamp"...
			  V,Qw = Unclamp(p,U,Pw,[C,l,r])
			Constructing wrapper function "bsp.RefineKnotVector"...
			  V,Qw = RefineKnotVector(p,U,Pw,X)
			Constructing wrapper function "bsp.DegreeElevate"...
			  V,Qw = DegreeElevate(p,U,Pw,t)
			Constructing wrapper function "bsp.Extract"...
			  Cw = Extract(p,U,Pw,uu)
			Constructing wrapper function "bsp.Evaluate0"...
			  Cw = Evaluate0(Pw)
			Constructing wrapper function "bsp.Evaluate1"...
			  Cw = Evaluate1(p,U,Pw,X)
			Constructing wrapper function "bsp.Evaluate2"...
			  Cw = Evaluate2(px,Ux,py,Uy,Pw,X,Y)
			Constructing wrapper function "bsp.Evaluate3"...
			  Cw = Evaluate3(px,Ux,py,Uy,pz,Uz,Pw,X,Y,Z)
			Constructing wrapper function "bsp.Gradient1"...
			  G = Gradient1(map,px,Ux,Pw,F,X)
			Constructing wrapper function "bsp.Gradient2"...
			  G = Gradient2(map,px,Ux,py,Uy,Pw,F,X,Y)
			Constructing wrapper function "bsp.Gradient3"...
			  G = Gradient3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z)
			Constructing wrapper function "bsp.Hessian1"...
			  H = Hessian1(map,px,Ux,Pw,F,X)
			Constructing wrapper function "bsp.Hessian2"...
			  H = Hessian2(map,px,Ux,py,Uy,Pw,F,X,Y)
			Constructing wrapper function "bsp.Hessian3"...
			  H = Hessian3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z)
			Constructing wrapper function "bsp.ThirdDer1"...
			  D3 = ThirdDer1(map,px,Ux,Pw,F,X)
			Constructing wrapper function "bsp.ThirdDer2"...
			  D3 = ThirdDer2(map,px,Ux,py,Uy,Pw,F,X,Y)
			Constructing wrapper function "bsp.ThirdDer3"...
			  D3 = ThirdDer3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z)
			Constructing wrapper function "bsp.FourthDer1"...
			  D4 = FourthDer1(map,px,Ux,Pw,F,X)
			Constructing wrapper function "bsp.FourthDer2"...
			  D4 = FourthDer2(map,px,Ux,py,Uy,Pw,F,X,Y)
			Constructing wrapper function "bsp.FourthDer3"...
			  D4 = FourthDer3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z)
		Constructing F90 module support for "iga"...
			Constructing wrapper function "iga.KnotVector"...
			  U = KnotVector(E,p,[C,Ui,Uf,wrap])
			Constructing wrapper function "iga.GaussLegendreRule"...
			  X,W = GaussLegendreRule(q)
			Constructing wrapper function "iga.GaussLobattoRule"...
			  X,W = GaussLobattoRule(q)
			Constructing wrapper function "iga.BasisData"...
			  O,J,W,X,N = BasisData(p,U,[d,q])
			Constructing wrapper function "iga.Greville"...
			  X = Greville(p,U)
			Constructing wrapper function "iga.BasisDataCol"...
			  O,N = BasisDataCol(p,U,X,[d])
	Wrote C/API module "igalib" to file "build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/igalibmodule.c"
	Fortran 90 wrappers are saved to "build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/igalib-f2pywrappers2.f90"
  adding 'build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/fortranobject.c' to sources.
  adding 'build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit' to include_dirs.
creating build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build
creating build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7
creating build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
  adding 'build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/igalib-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_py
creating build/lib.freebsd-12.0-RELEASE-p7-arm-2.7
creating build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/nurbs.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/cad.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/plot_myv.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/__init__.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/transform.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/plot.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/io.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/plot_nul.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
copying igakit/plot_mpl.py -> build/lib.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
running build_ext
customize UnixCCompiler
C compiler: /nxb-bin/usr/bin/cc -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC

creating /tmp/tmpT3cIyF/tmp
creating /tmp/tmpT3cIyF/tmp/tmpT3cIyF
compile options: '-MMD -MF /tmp/tmpT3cIyF/file.c.d -c'
cc: /tmp/tmpT3cIyF/file.c
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu', 'gnu95']'
customize GnuFCompiler
Found executable /usr/local/bin/gfortran8
gnu: no Fortran 90 compiler found
Could not locate executable /nxb-bin/usr/bin/cc -shared
Found executable /usr/local/bin/ld
Found executable /usr/local/bin/ar
Found executable /usr/local/bin/ranlib
gnu: no Fortran 90 compiler found
customize Gnu95FCompiler
/usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:517: UserWarning: FFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  fflags = self.flag_vars.flags + dflags + oflags + aflags
/usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:530: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  linker_so_flags = self.flag_vars.linker_so
/usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:540: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  linker_exe_flags = self.flag_vars.linker_exe
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'igakit.igalib' extension
compiling C sources
C compiler: /nxb-bin/usr/bin/cc -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC

creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
compile options: '-Ibuild/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c'
cc: build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/igalibmodule.ccc: build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/fortranobject.c

In file included from build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/igalibmodule.c:16:
In file included from build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/fortranobject.h:13:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
In file included from build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/fortranobject.c:2:
In file included from build/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit/fortranobject.h:13:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
1 warning generated.
compiling Fortran 90 module sources
creating build/temp.freebsd-12.0-RELEASE-p7-arm-2.7/igakit
Fortran f77 compiler: gfortran8 -Wall -g -ffixed-form -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc8 -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc8 -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc8 -O3 -funroll-loops
compile options: '-Ibuild/src.freebsd-12.0-RELEASE-p7-arm-2.7/build/src.freebsd-12.0-RELEASE-p7-arm-2.7/igakit -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c'
extra options: '-Jbuild/temp.freebsd-12.0-RELEASE-p7-arm-2.7/igakit -Ibuild/temp.freebsd-12.0-RELEASE-p7-arm-2.7/igakit'
gfortran8:f90: igakit/igalib.f90
Fatal error 'thread 0xf247ed00 exits with resources held!' at line 320 in file /usr/local/poudriere/jails/120armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 35)
*** Signal 11

Stop.
make: stopped in /usr/ports/math/py-igakit



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