From owner-dev-commits-ports-all@freebsd.org Mon Jul 12 13:37:52 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 263CC660F9E; Mon, 12 Jul 2021 13:37:52 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4GNlFX0Y7lz3nRD; Mon, 12 Jul 2021 13:37:52 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id EE0497C92; Mon, 12 Jul 2021 13:37:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 16CDbpmq035606; Mon, 12 Jul 2021 13:37:51 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 16CDbp7P035605; Mon, 12 Jul 2021 13:37:51 GMT (envelope-from git) Date: Mon, 12 Jul 2021 13:37:51 GMT Message-Id: <202107121337.16CDbp7P035605@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 5fa07128ec66 - main - htslib: Update to 1.13 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 5fa07128ec66ff71ca0348a324e2777eb00ee89a Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 12 Jul 2021 13:37:52 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=5fa07128ec66ff71ca0348a324e2777eb00ee89a commit 5fa07128ec66ff71ca0348a324e2777eb00ee89a Author: Jason W. Bacon AuthorDate: 2021-07-12 13:16:45 +0000 Commit: Jason W. Bacon CommitDate: 2021-07-12 13:16:45 +0000 htslib: Update to 1.13 Numerous enhancements and bug fixes Changes: https://github.com/samtools/htslib/releases/tag/1.13 --- biology/htslib/Makefile | 2 +- biology/htslib/distinfo | 6 +++--- biology/htslib/files/patch-hts.c | 10 ---------- 3 files changed, 4 insertions(+), 14 deletions(-) diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 85e509a6435b..d326ae2b0b65 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright PORTNAME= htslib -DISTVERSION= 1.12 +DISTVERSION= 1.13 CATEGORIES= biology devel # Github generated distfiles are incomplete, so use custom tarball MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 2bc449b5deb6..dc4bf1b4ea09 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112272 -SHA256 (htslib-1.12.tar.bz2) = 2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca -SIZE (htslib-1.12.tar.bz2) = 4094458 +TIMESTAMP = 1626039683 +SHA256 (htslib-1.13.tar.bz2) = f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65 +SIZE (htslib-1.13.tar.bz2) = 4226834 diff --git a/biology/htslib/files/patch-hts.c b/biology/htslib/files/patch-hts.c deleted file mode 100644 index d18904348c86..000000000000 --- a/biology/htslib/files/patch-hts.c +++ /dev/null @@ -1,10 +0,0 @@ ---- hts.c.orig 2020-10-18 00:49:42 UTC -+++ hts.c -@@ -39,6 +39,7 @@ DEALINGS IN THE SOFTWARE. */ - #include - #include - #include -+#include // R_OK - - #include "htslib/hts.h" - #include "htslib/bgzf.h"