Date: Tue, 10 Aug 2021 09:42:39 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 114amd64-default][biology/py-resdk] Failed for py38-resdk-13.3.0 in run-depends Message-ID: <202108100942.17A9gd1N052233@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy9.nyi.freebsd.org/data/114amd64-default/b0feab7c6348/logs/py38-resdk-13.3.0.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=b0feab7c6348 Log: =>> Building biology/py-resdk build started at Tue Aug 10 09:42:34 UTC 2021 port directory: /usr/ports/biology/py-resdk package name: py38-resdk-13.3.0 building for: FreeBSD 114amd64-default-job-03 11.4-RELEASE-p12 FreeBSD 11.4-RELEASE-p12 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1104001 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1104001 UNAME_v=FreeBSD 11.4-RELEASE-p12 UNAME_r=11.4-RELEASE-p12 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/114amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=114amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py38 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py38 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-resdk/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 HOME=/wrkdirs/usr/ports/biology/py-resdk/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-resdk/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/resdk" EXAMPLESDIR="share/examples/resdk" DATADIR="share/resdk" WWWDIR="www/resdk" ETCDIR="etc/resdk" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/resdk DOCSDIR=/usr/local/share/doc/resdk EXAMPLESDIR=/usr/local/share/examples/resdk WWWDIR=/usr/local/www/resdk ETCDIR=/usr/local/etc/resdk --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.4-RELEASE-p12 OSREL=11.4 OSVERSION=1104001 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py38-resdk-13.3.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.1.pkg [114amd64-default-job-03] Installing pkg-1.17.1... [114amd64-default-job-03] Extracting pkg-1.17.1: .......... done ===> py38-resdk-13.3.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py38-resdk-13.3.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-resdk-13.3.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-resdk-13.3.0 for building => SHA256 Checksum OK for resdk-13.3.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-resdk-13.3.0 for building ===> Extracting for py38-resdk-13.3.0 => SHA256 Checksum OK for resdk-13.3.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py38-resdk-13.3.0 =========================================================================== =======================<phase: build-depends >============================ ===> py38-resdk-13.3.0 depends on package: py38-setuptools>0 - not found ===> Installing existing package /packages/All/py38-setuptools-57.0.0.pkg [114amd64-default-job-03] Installing py38-setuptools-57.0.0... [114amd64-default-job-03] `-- Installing python38-3.8.11... [114amd64-default-job-03] | `-- Installing gettext-runtime-0.21... [114amd64-default-job-03] | | `-- Installing indexinfo-0.3.1... [114amd64-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done [114amd64-default-job-03] | `-- Extracting gettext-runtime-0.21: .......... done [114amd64-default-job-03] | `-- Installing libffi-3.3_1... [114amd64-default-job-03] | `-- Extracting libffi-3.3_1: .......... done [114amd64-default-job-03] | `-- Installing mpdecimal-2.5.1... [114amd64-default-job-03] | `-- Extracting mpdecimal-2.5.1: .......... done [114amd64-default-job-03] | `-- Installing readline-8.1.1... [114amd64-default-job-03] | `-- Extracting readline-8.1.1: .......... done [114amd64-default-job-03] `-- Extracting python38-3.8.11: .......... done [114amd64-default-job-03] Extracting py38-setuptools-57.0.0: .......... done ===== Message from python38-3.8.11: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py38-gdbm databases/py-gdbm@py38 py38-sqlite3 databases/py-sqlite3@py38 py38-tkinter x11-toolkits/py-tkinter@py38 ===> py38-resdk-13.3.0 depends on package: py38-setuptools>0 - found ===> Returning to build of py38-resdk-13.3.0 ===> py38-resdk-13.3.0 depends on file: /usr/local/bin/python3.8 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py38-resdk-13.3.0 running config /usr/local/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version' warnings.warn(msg) =========================================================================== =======================<phase: build >============================ ===> Building for py38-resdk-13.3.0 running build running build_py creating build creating build/lib creating build/lib/resdk copying src/resdk/resdk_logger.py -> build/lib/resdk copying src/resdk/resolwe.py -> build/lib/resdk copying src/resdk/__init__.py -> build/lib/resdk copying src/resdk/constants.py -> build/lib/resdk copying src/resdk/query.py -> build/lib/resdk copying src/resdk/collection_tables.py -> build/lib/resdk copying src/resdk/exceptions.py -> build/lib/resdk copying src/resdk/__about__.py -> build/lib/resdk creating build/lib/resdk/shortcuts copying src/resdk/shortcuts/__init__.py -> build/lib/resdk/shortcuts copying src/resdk/shortcuts/collection.py -> build/lib/resdk/shortcuts copying src/resdk/shortcuts/sample.py -> build/lib/resdk/shortcuts creating build/lib/resdk/utils copying src/resdk/utils/decorators.py -> build/lib/resdk/utils copying src/resdk/utils/table_cache.py -> build/lib/resdk/utils copying src/resdk/utils/__init__.py -> build/lib/resdk/utils creating build/lib/resdk/resources copying src/resdk/resources/permissions.py -> build/lib/resdk/resources copying src/resdk/resources/descriptor.py -> build/lib/resdk/resources copying src/resdk/resources/__init__.py -> build/lib/resdk/resources copying src/resdk/resources/base.py -> build/lib/resdk/resources copying src/resdk/resources/user.py -> build/lib/resdk/resources copying src/resdk/resources/data.py -> build/lib/resdk/resources copying src/resdk/resources/utils.py -> build/lib/resdk/resources copying src/resdk/resources/collection.py -> build/lib/resdk/resources copying src/resdk/resources/process.py -> build/lib/resdk/resources copying src/resdk/resources/sample.py -> build/lib/resdk/resources copying src/resdk/resources/relation.py -> build/lib/resdk/resources creating build/lib/resdk/resources/kb copying src/resdk/resources/kb/__init__.py -> build/lib/resdk/resources/kb copying src/resdk/resources/kb/mapping.py -> build/lib/resdk/resources/kb copying src/resdk/resources/kb/feature.py -> build/lib/resdk/resources/kb /usr/local/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version' warnings.warn(msg) =========================================================================== =======================<phase: run-depends >============================ ===> py38-resdk-13.3.0 depends on package: py38-aiohttp>0 - not found ===> Installing existing package /packages/All/py38-aiohttp-3.7.4.p0.pkg [114amd64-default-job-03] Installing py38-aiohttp-3.7.4.p0... [114amd64-default-job-03] `-- Installing py38-async_timeout-3.0.1... [114amd64-default-job-03] `-- Extracting py38-async_timeout-3.0.1: .......... done [114amd64-default-job-03] `-- Installing py38-attrs-21.2.0... [114amd64-default-job-03] `-- Extracting py38-attrs-21.2.0: .......... done [114amd64-default-job-03] `-- Installing py38-chardet-4.0.0,1... [114amd64-default-job-03] `-- Extracting py38-chardet-4.0.0,1: .......... done [114amd64-default-job-03] `-- Installing py38-multidict-5.1.0... [114amd64-default-job-03] `-- Extracting py38-multidict-5.1.0: .......... done [114amd64-default-job-03] `-- Installing py38-typing-extensions-3.10.0.0... [114amd64-default-job-03] `-- Extracting py38-typing-extensions-3.10.0.0: .......... done [114amd64-default-job-03] `-- Installing py38-yarl-1.6.3... [114amd64-default-job-03] | `-- Installing py38-idna-2.10... [114amd64-default-job-03] | `-- Extracting py38-idna-2.10: .......... done [114amd64-default-job-03] `-- Extracting py38-yarl-1.6.3: .......... done [114amd64-default-job-03] Extracting py38-aiohttp-3.7.4.p0: .......... done ===> py38-resdk-13.3.0 depends on package: py38-aiohttp>0 - found ===> Returning to build of py38-resdk-13.3.0 ===> py38-resdk-13.3.0 depends on package: py38-chardet<=4.0,>=2.0 - not found ===> Installing existing package /packages/All/py38-chardet-4.0.0,1.pkg [114amd64-default-job-03] Installing py38-chardet-4.0.0,1... the most recent version of py38-chardet-4.0.0,1 is already installed ===> py38-resdk-13.3.0 depends on package: py38-chardet<=4.0,>=2.0 - not found *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-resdk
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