From nobody Sat Feb 26 14:50:35 2022 X-Original-To: ports-bugs@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 2315619DE24B for ; Sat, 26 Feb 2022 14:50:36 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4K5V1l5hJMz3DJw for ; Sat, 26 Feb 2022 14:50:35 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2610:1c1:1:606c::50:1d]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 9F41A15923 for ; Sat, 26 Feb 2022 14:50:35 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.5]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id 21QEoZhh003391 for ; Sat, 26 Feb 2022 14:50:35 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id 21QEoZ9L003390 for ports-bugs@FreeBSD.org; Sat, 26 Feb 2022 14:50:35 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 262208] science/py-pymol: build hangs compiling ov/src/OVHeapArray.cpp Date: Sat, 26 Feb 2022 14:50:35 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: fuz@fuz.su X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: yuri@freebsd.org X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter flagtypes.name attachments.mimetype attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated List-Id: Ports bug reports List-Archive: https://lists.freebsd.org/archives/freebsd-ports-bugs List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-ports-bugs@freebsd.org X-BeenThere: freebsd-ports-bugs@freebsd.org MIME-Version: 1.0 ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1645887035; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=teVAhbQnzDA9GDjpSQ1bjoFTOGkFkG3XDmmHDPd6VMs=; b=u5tURoAuAoVqevlIbYiMcS50HiG7teGnmo9xh7Szt0c1XMcPfF/AlCZpzZrVww7MHdTDk7 ZT4BavAz7ZJo5SU9bi3t4rF+10TuoA53Ytauu25jQpdx4DpIRCpCE5tL75ePVuQTIrjmIR 1g/x1iYjp5I9mP2hMzvj79V9yMalyWZ6hscVX5RN7t4wpamrtQkIuVLpxHIrk+juNr6lW6 Fufm+CKbCunS4hYNaqJql5nlP1UO6/m0HUdozk2CjMuJwdI1Dho32CAYhuLhoW7AlxyzyS BVjbgBdrvY9bGrm6FoHgXToWsSOH/xfuUYwMZjPBBVHyJmTS1nONu+K525jJVQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1645887035; a=rsa-sha256; cv=none; b=n6vOIIVpBUjeLE65r2Y5HvLsVw2IrSFlAzbgjjIirsPCdeEaeYh+a6Ec1wv4ymDuRz4mEm nylseuTP43QUZOjuGF0DrnVeaQcQw7fJ87lm4uV7Hx7jJQmwbok25HkqK8uZR45vIQGt72 Kw9cdKG7Gt+enxR/IbeY8IXVKboVMwrW9Lymf/xHg/mnCkXcRCGq1WEHgYNntnx8mr1rX1 DfGOFg+fvzROIsYIfujuu1cUHVrdJbEIhkjYgx2TYC+pldYMdEE7dGWnqrm7LDNBroT4Pf AoKWD7PSsgn1lFnk53+SpdqkJN6WtadoPtxksSmGz09CBbdhepxv0Dugp+mY9w== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D262208 Bug ID: 262208 Summary: science/py-pymol: build hangs compiling ov/src/OVHeapArray.cpp Product: Ports & Packages Version: Latest Hardware: arm OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: yuri@freebsd.org Reporter: fuz@fuz.su Flags: maintainer-feedback?(yuri@freebsd.org) Assignee: yuri@freebsd.org Attachment #232123 text/plain mime type: Created attachment 232123 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D232123&action= =3Dedit science/py-pymol@py38 2.4.0_3 build log on armv7 FreeBSD 13 When building this port for armv7 FreeBSD 13 with Poudriere on an aarch64 machine (no emulation, no native cross tools), the build proceeds as normal= but then hangs at this command: c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=3Dc++11 -f= PIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.8 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.freebsd-13.0-RELEASE-p4-arm-3.8/ov/src/OVHeapArray.o -Werror=3Dreturn-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 Inspection of the process table shows the C++ compiler running at 100% CPU until it gets mercy killed after 6 hours of no progress with my configurati= on. Attached is a sample build log. I was able to reproduce this multiple times with the same result. --=20 You are receiving this mail because: You are the assignee for the bug.=