Date: Thu, 15 Nov 2018 06:40:50 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r485003 - in head/science: . simbody Message-ID: <201811150640.wAF6eoKa053448@repo.freebsd.org>
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Author: yuri Date: Thu Nov 15 06:40:50 2018 New Revision: 485003 URL: https://svnweb.freebsd.org/changeset/ports/485003 Log: New port: science/simbody: Multibody dynamics library for (bio)mechanical systems simulation Added: head/science/simbody/ head/science/simbody/Makefile (contents, props changed) head/science/simbody/distinfo (contents, props changed) head/science/simbody/pkg-descr (contents, props changed) head/science/simbody/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Thu Nov 15 06:10:03 2018 (r485002) +++ head/science/Makefile Thu Nov 15 06:40:50 2018 (r485003) @@ -279,6 +279,7 @@ SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo + SUBDIR += simbody SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith Added: head/science/simbody/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/simbody/Makefile Thu Nov 15 06:40:50 2018 (r485003) @@ -0,0 +1,48 @@ +# $FreeBSD$ + +PORTNAME= simbody +DISTVERSIONPREFIX= Simbody- +DISTVERSION= 3.6.1 +CATEGORIES= science biology + +PATCH_SITES= https://github.com/${PORTNAME}/${PORTNAME}/commit/ +PATCHFILES= 1b306f66bcd15e9bf6b27882e2daa6375ac4cd2e.patch:-p1 \ + eaff90b304291ab9ffdf60d7abfb48e23e102ecb.patch:-p1 + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Multibody dynamics library for (bio)mechanical systems simulation + +LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +LIB_DEPENDS= libopenblas.so:math/openblas + +USES= blaslapack:openblas cmake:outsource compiler:c++11-lang fortran # fortran only for openblas +USE_GITHUB= yes +USE_LDCONFIG= yes + +CMAKE_OFF= BUILD_TESTING BUILD_EXAMPLES +CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so + +OPTIONS_DEFINE= DOCS VISUALIZER +OPTIONS_DEFAULT= VISUALIZER +OPTIONS_SUB= yes + +DOCS_CMAKE_BOOL= INSTALL_DOCS + +VISUALIZER_CMAKE_BOOL= BUILD_VISUALIZER +VISUALIZER_USES= gl +VISUALIZER_USE= GL=gl,glu,glut XORG=xi,xmu + +PORTDOCS= * + +post-install-DOCS-on: # https://github.com/simbody/simbody/issues/652 + @${RMDIR} ${STAGEDIR}${DOCSDIR}/api + +do-test: # one test is known to fail: https://github.com/simbody/simbody/issues/653 + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_TESTING=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test + +.include <bsd.port.mk> Added: head/science/simbody/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/simbody/distinfo Thu Nov 15 06:40:50 2018 (r485003) @@ -0,0 +1,7 @@ +TIMESTAMP = 1542263337 +SHA256 (simbody-simbody-Simbody-3.6.1_GH0.tar.gz) = 7716d6ea20b950e71e8535faa4353ac89716c03fd7a445dd802eb6a630796639 +SIZE (simbody-simbody-Simbody-3.6.1_GH0.tar.gz) = 47178543 +SHA256 (1b306f66bcd15e9bf6b27882e2daa6375ac4cd2e.patch) = 42468083313fc489c763ad2562c7a4baeeca02b7c81f35a94dad3368e4c7c4b8 +SIZE (1b306f66bcd15e9bf6b27882e2daa6375ac4cd2e.patch) = 1473 +SHA256 (eaff90b304291ab9ffdf60d7abfb48e23e102ecb.patch) = 8098b7efa4509a70d1561cad84d3d84549a58a4ac83f3af7d0a94e3cdd7ec4c4 +SIZE (eaff90b304291ab9ffdf60d7abfb48e23e102ecb.patch) = 1350 Added: head/science/simbody/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/simbody/pkg-descr Thu Nov 15 06:40:50 2018 (r485003) @@ -0,0 +1,6 @@ +Simbody is useful for internal coordinate and coarse grained molecule modeling, +large scale mechanical models like skeletons, and anything else that can be +modeled as bodies interconnected by joints, acted upon by forces, and restricted +by constraints. + +WWW: https://simtk.org/projects/simbody Added: head/science/simbody/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/simbody/pkg-plist Thu Nov 15 06:40:50 2018 (r485003) @@ -0,0 +1,225 @@ +include/simbody/SimTKcommon.h +include/simbody/SimTKcommon/Constants.h +include/simbody/SimTKcommon/Mechanics.h +include/simbody/SimTKcommon/Orientation.h +include/simbody/SimTKcommon/Scalar.h +include/simbody/SimTKcommon/Simmatrix.h +include/simbody/SimTKcommon/SmallMatrix.h +include/simbody/SimTKcommon/TemplatizedLapack.h +include/simbody/SimTKcommon/Testing.h +include/simbody/SimTKcommon/basics.h +include/simbody/SimTKcommon/internal/Array.h +include/simbody/SimTKcommon/internal/BigMatrix.h +include/simbody/SimTKcommon/internal/CloneOnWritePtr.h +include/simbody/SimTKcommon/internal/ClonePtr.h +include/simbody/SimTKcommon/internal/CompositeNumericalTypes.h +include/simbody/SimTKcommon/internal/CoordinateAxis.h +include/simbody/SimTKcommon/internal/DecorationGenerator.h +include/simbody/SimTKcommon/internal/DecorativeGeometry.h +include/simbody/SimTKcommon/internal/Event.h +include/simbody/SimTKcommon/internal/EventHandler.h +include/simbody/SimTKcommon/internal/EventReporter.h +include/simbody/SimTKcommon/internal/Exception.h +include/simbody/SimTKcommon/internal/ExceptionMacros.h +include/simbody/SimTKcommon/internal/Fortran.h +include/simbody/SimTKcommon/internal/Function.h +include/simbody/SimTKcommon/internal/IteratorRange.h +include/simbody/SimTKcommon/internal/MassProperties.h +include/simbody/SimTKcommon/internal/Mat.h +include/simbody/SimTKcommon/internal/MatrixBase.h +include/simbody/SimTKcommon/internal/MatrixCharacteristics.h +include/simbody/SimTKcommon/internal/MatrixHelper.h +include/simbody/SimTKcommon/internal/MatrixView_.h +include/simbody/SimTKcommon/internal/Matrix_.h +include/simbody/SimTKcommon/internal/Measure.h +include/simbody/SimTKcommon/internal/MeasureImplementation.h +include/simbody/SimTKcommon/internal/NTraits.h +include/simbody/SimTKcommon/internal/Parallel2DExecutor.h +include/simbody/SimTKcommon/internal/ParallelExecutor.h +include/simbody/SimTKcommon/internal/ParallelWorkQueue.h +include/simbody/SimTKcommon/internal/Pathname.h +include/simbody/SimTKcommon/internal/Plugin.h +include/simbody/SimTKcommon/internal/PolygonalMesh.h +include/simbody/SimTKcommon/internal/PolynomialRootFinder.h +include/simbody/SimTKcommon/internal/PrivateImplementation.h +include/simbody/SimTKcommon/internal/PrivateImplementation_Defs.h +include/simbody/SimTKcommon/internal/Quaternion.h +include/simbody/SimTKcommon/internal/Random.h +include/simbody/SimTKcommon/internal/ReferencePtr.h +include/simbody/SimTKcommon/internal/ReinitOnCopy.h +include/simbody/SimTKcommon/internal/ResetOnCopy.h +include/simbody/SimTKcommon/internal/ResultType.h +include/simbody/SimTKcommon/internal/Rotation.h +include/simbody/SimTKcommon/internal/Row.h +include/simbody/SimTKcommon/internal/RowVectorBase.h +include/simbody/SimTKcommon/internal/RowVectorView_.h +include/simbody/SimTKcommon/internal/RowVector_.h +include/simbody/SimTKcommon/internal/Serialize.h +include/simbody/SimTKcommon/internal/SmallDefsThatNeedBig.h +include/simbody/SimTKcommon/internal/SmallMatrixMixed.h +include/simbody/SimTKcommon/internal/SpatialAlgebra.h +include/simbody/SimTKcommon/internal/StableArray.h +include/simbody/SimTKcommon/internal/Stage.h +include/simbody/SimTKcommon/internal/State.h +include/simbody/SimTKcommon/internal/StateImpl.h +include/simbody/SimTKcommon/internal/String.h +include/simbody/SimTKcommon/internal/Study.h +include/simbody/SimTKcommon/internal/StudyGuts.h +include/simbody/SimTKcommon/internal/Subsystem.h +include/simbody/SimTKcommon/internal/SubsystemGuts.h +include/simbody/SimTKcommon/internal/SymMat.h +include/simbody/SimTKcommon/internal/System.h +include/simbody/SimTKcommon/internal/SystemGuts.h +include/simbody/SimTKcommon/internal/Timing.h +include/simbody/SimTKcommon/internal/Transform.h +include/simbody/SimTKcommon/internal/UnitVec.h +include/simbody/SimTKcommon/internal/Value.h +include/simbody/SimTKcommon/internal/Vec.h +include/simbody/SimTKcommon/internal/VectorBase.h +include/simbody/SimTKcommon/internal/VectorIterator.h +include/simbody/SimTKcommon/internal/VectorMath.h +include/simbody/SimTKcommon/internal/VectorView_.h +include/simbody/SimTKcommon/internal/Vector_.h +include/simbody/SimTKcommon/internal/Xml.h +include/simbody/SimTKcommon/internal/common.h +include/simbody/SimTKcommon/internal/conjugate.h +include/simbody/SimTKcommon/internal/negator.h +include/simbody/SimTKlapack.h +include/simbody/SimTKmath.h +include/simbody/SimTKsimbody.h +include/simbody/SimTKsimbody_aux.h +include/simbody/Simbody.h +include/simbody/simbody/internal/Assembler.h +include/simbody/simbody/internal/AssemblyCondition.h +include/simbody/simbody/internal/AssemblyCondition_Markers.h +include/simbody/simbody/internal/AssemblyCondition_OrientationSensors.h +include/simbody/simbody/internal/AssemblyCondition_QValue.h +include/simbody/simbody/internal/Body.h +include/simbody/simbody/internal/CablePath.h +include/simbody/simbody/internal/CableSpring.h +include/simbody/simbody/internal/CableTrackerSubsystem.h +include/simbody/simbody/internal/CompliantContactSubsystem.h +include/simbody/simbody/internal/ConditionalConstraint.h +include/simbody/simbody/internal/Constraint.h +include/simbody/simbody/internal/Constraint_Ball.h +include/simbody/simbody/internal/Constraint_BuiltIns.h +include/simbody/simbody/internal/Constraint_LineOnLineContact.h +include/simbody/simbody/internal/Constraint_PointInPlane.h +include/simbody/simbody/internal/Constraint_PointOnPlaneContact.h +include/simbody/simbody/internal/Constraint_Rod.h +include/simbody/simbody/internal/Constraint_SphereOnPlaneContact.h +include/simbody/simbody/internal/Constraint_SphereOnSphereContact.h +include/simbody/simbody/internal/Constraint_Weld.h +include/simbody/simbody/internal/ContactSurface.h +include/simbody/simbody/internal/ContactTrackerSubsystem.h +include/simbody/simbody/internal/DecorationSubsystem.h +include/simbody/simbody/internal/ElasticFoundationForce.h +include/simbody/simbody/internal/Force.h +include/simbody/simbody/internal/ForceSubsystem.h +include/simbody/simbody/internal/ForceSubsystemGuts.h +include/simbody/simbody/internal/Force_BuiltIns.h +include/simbody/simbody/internal/Force_Custom.h +include/simbody/simbody/internal/Force_DiscreteForces.h +include/simbody/simbody/internal/Force_Gravity.h +include/simbody/simbody/internal/Force_LinearBushing.h +include/simbody/simbody/internal/Force_MobilityConstantForce.h +include/simbody/simbody/internal/Force_MobilityDiscreteForce.h +include/simbody/simbody/internal/Force_MobilityLinearDamper.h +include/simbody/simbody/internal/Force_MobilityLinearSpring.h +include/simbody/simbody/internal/Force_MobilityLinearStop.h +include/simbody/simbody/internal/Force_Thermostat.h +include/simbody/simbody/internal/GeneralContactSubsystem.h +include/simbody/simbody/internal/GeneralForceSubsystem.h +include/simbody/simbody/internal/HuntCrossleyContact.h +include/simbody/simbody/internal/HuntCrossleyForce.h +include/simbody/simbody/internal/ImpulseSolver.h +include/simbody/simbody/internal/LocalEnergyMinimizer.h +include/simbody/simbody/internal/MobilizedBody.h +include/simbody/simbody/internal/MobilizedBody_Ball.h +include/simbody/simbody/internal/MobilizedBody_BendStretch.h +include/simbody/simbody/internal/MobilizedBody_BuiltIns.h +include/simbody/simbody/internal/MobilizedBody_Bushing.h +include/simbody/simbody/internal/MobilizedBody_Custom.h +include/simbody/simbody/internal/MobilizedBody_Cylinder.h +include/simbody/simbody/internal/MobilizedBody_Ellipsoid.h +include/simbody/simbody/internal/MobilizedBody_Free.h +include/simbody/simbody/internal/MobilizedBody_FreeLine.h +include/simbody/simbody/internal/MobilizedBody_FunctionBased.h +include/simbody/simbody/internal/MobilizedBody_Gimbal.h +include/simbody/simbody/internal/MobilizedBody_Ground.h +include/simbody/simbody/internal/MobilizedBody_LineOrientation.h +include/simbody/simbody/internal/MobilizedBody_Pin.h +include/simbody/simbody/internal/MobilizedBody_Planar.h +include/simbody/simbody/internal/MobilizedBody_Screw.h +include/simbody/simbody/internal/MobilizedBody_Slider.h +include/simbody/simbody/internal/MobilizedBody_SphericalCoords.h +include/simbody/simbody/internal/MobilizedBody_Translation.h +include/simbody/simbody/internal/MobilizedBody_Universal.h +include/simbody/simbody/internal/MobilizedBody_Weld.h +include/simbody/simbody/internal/Motion.h +include/simbody/simbody/internal/MultibodySystem.h +include/simbody/simbody/internal/ObservedPointFitter.h +include/simbody/simbody/internal/PGSImpulseSolver.h +include/simbody/simbody/internal/PLUSImpulseSolver.h +include/simbody/simbody/internal/SemiExplicitEulerTimeStepper.h +include/simbody/simbody/internal/SimbodyMatterSubsystem.h +include/simbody/simbody/internal/SimbodyMatterSubtree.h +include/simbody/simbody/internal/TextDataEventReporter.h +include/simbody/simbody/internal/Visualizer.h +include/simbody/simbody/internal/Visualizer_InputListener.h +include/simbody/simbody/internal/Visualizer_Reporter.h +include/simbody/simbody/internal/common.h +include/simbody/simmath/CPodesIntegrator.h +include/simbody/simmath/Differentiator.h +include/simbody/simmath/ExplicitEulerIntegrator.h +include/simbody/simmath/Integrator.h +include/simbody/simmath/LinearAlgebra.h +include/simbody/simmath/MultibodyGraphMaker.h +include/simbody/simmath/Optimizer.h +include/simbody/simmath/RungeKutta2Integrator.h +include/simbody/simmath/RungeKutta3Integrator.h +include/simbody/simmath/RungeKuttaFeldbergIntegrator.h +include/simbody/simmath/RungeKuttaMersonIntegrator.h +include/simbody/simmath/SemiExplicitEuler2Integrator.h +include/simbody/simmath/SemiExplicitEulerIntegrator.h +include/simbody/simmath/TimeStepper.h +include/simbody/simmath/VerletIntegrator.h +include/simbody/simmath/internal/BicubicSurface.h +include/simbody/simmath/internal/CollisionDetectionAlgorithm.h +include/simbody/simmath/internal/Contact.h +include/simbody/simmath/internal/ContactGeometry.h +include/simbody/simmath/internal/ContactTracker.h +include/simbody/simmath/internal/GCVSPLUtil.h +include/simbody/simmath/internal/Geo.h +include/simbody/simmath/internal/Geo_BicubicBezierPatch.h +include/simbody/simmath/internal/Geo_BicubicHermitePatch.h +include/simbody/simmath/internal/Geo_Box.h +include/simbody/simmath/internal/Geo_CubicBezierCurve.h +include/simbody/simmath/internal/Geo_CubicHermiteCurve.h +include/simbody/simmath/internal/Geo_LineSeg.h +include/simbody/simmath/internal/Geo_Point.h +include/simbody/simmath/internal/Geo_Sphere.h +include/simbody/simmath/internal/Geo_Triangle.h +include/simbody/simmath/internal/Geodesic.h +include/simbody/simmath/internal/GeodesicIntegrator.h +include/simbody/simmath/internal/OBBTree.h +include/simbody/simmath/internal/OptimizerRep.h +include/simbody/simmath/internal/OrientedBoundingBox.h +include/simbody/simmath/internal/ParticleConSurfaceSystem.h +include/simbody/simmath/internal/SimTKcpodes.h +include/simbody/simmath/internal/Spline.h +include/simbody/simmath/internal/SplineFitter.h +include/simbody/simmath/internal/common.h +lib/cmake/simbody/SampleCMakeLists.txt +lib/cmake/simbody/SimbodyConfig.cmake +lib/cmake/simbody/SimbodyConfigVersion.cmake +lib/cmake/simbody/SimbodyTargets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/simbody/SimbodyTargets.cmake +lib/libSimTKcommon.so +lib/libSimTKcommon.so.3.6 +lib/libSimTKmath.so +lib/libSimTKmath.so.3.6 +lib/libSimTKsimbody.so +lib/libSimTKsimbody.so.3.6 +libdata/pkgconfig/simbody.pc +%%VISUALIZER%%libexec/simbody/simbody-visualizer
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