From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Apr 5 21:10:02 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 22CF9106566C for ; Sat, 5 Apr 2008 21:10:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id E3F018FC20 for ; Sat, 5 Apr 2008 21:10:01 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.2/8.14.2) with ESMTP id m35LA1nv022661 for ; Sat, 5 Apr 2008 21:10:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.2/8.14.1/Submit) id m35LA1rj022660; Sat, 5 Apr 2008 21:10:01 GMT (envelope-from gnats) Resent-Date: Sat, 5 Apr 2008 21:10:01 GMT Resent-Message-Id: <200804052110.m35LA1rj022660@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, "M. L. Dodson" Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 27AA4106564A for ; Sat, 5 Apr 2008 21:05:01 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 0651B8FC18 for ; Sat, 5 Apr 2008 21:05:01 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.2/8.14.2) with ESMTP id m35L4obk099298 for ; Sat, 5 Apr 2008 21:04:50 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.2/8.14.1/Submit) id m35L4oL1099295; Sat, 5 Apr 2008 21:04:50 GMT (envelope-from nobody) Message-Id: <200804052104.m35L4oL1099295@www.freebsd.org> Date: Sat, 5 Apr 2008 21:04:50 GMT From: "M. L. Dodson" To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/122474: Maintainer update of biology/nab and mark for deprecation X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 05 Apr 2008 21:10:02 -0000 >Number: 122474 >Category: ports >Synopsis: Maintainer update of biology/nab and mark for deprecation >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Apr 05 21:10:01 UTC 2008 >Closed-Date: >Last-Modified: >Originator: M. L. Dodson >Release: 6.3-RELEASE >Organization: Active Site Dynamics >Environment: FreeBSD wotan.mlandml.net 6.3-RELEASE FreeBSD 6.3-RELEASE #1: Tue Feb 12 18:57:01 CST 2008 mldodson@wotan.mlandml.net:/usr/obj/usr/src/sys/WOTAN i386 >Description: I am the maintainer of this port This pr (1) updates my email address. (2) Sets a new MASTER_SITES as the software has been superceded by AmberTools-1.0 from the same development group, and the distribution is no longer available from them. (3) Marks the port as DEPRECATED since the software has been superceded. I will prepare a port of AmberTools soon, but in the meantime I will be hosting the nab distribution on my own server as it is no longer available from the developer. >How-To-Repeat: N. A. >Fix: --- Makefile.orig 2007-12-16 09:01:18.000000000 -0600 +++ Makefile 2008-04-05 15:54:08.000000000 -0500 @@ -1,22 +1,24 @@ # New ports collection Makefile for: nab # Date created: Sept. 10, 2000 -# Whom: M. L. Dodson +# Whom: M. L. Dodson # -# $FreeBSD: ports/biology/nab/Makefile,v 1.21 2007/10/28 21:42:23 miwi Exp $ +# $FreeBSD: $ # PORTNAME= nab PORTVERSION= 5.1.2 PORTREVISION= 1 CATEGORIES= biology -MASTER_SITES= http://www.scripps.edu/mb/case/ +MASTER_SITES= http://www.activesitedynamics.com/mldodson/ -MAINTAINER= mldodson@houston.rr.com +MAINTAINER= mldodson@comcast.net COMMENT= A language for macromolecules BUILD_DEPENDS= ucpp:${PORTSDIR}/devel/ucpp RUN_DEPENDS= ucpp:${PORTSDIR}/devel/ucpp +DEPRECATED= Superceded by AmberTools (by same development group) + MAKE_ENV+= NABHOME=${WRKSRC} ARCH= PATH=${WRKSRC}/bin:${PATH} \ CFLAGS="${CFLAGS}" OCFLAGS="${CFLAGS}" FFLAGS="${FFLAGS}" >Release-Note: >Audit-Trail: >Unformatted: