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Date:      Fri, 28 Sep 2018 00:12:49 +0000 (UTC)
From:      Wen Heping <wen@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r480837 - head/biology/tRNAscan-SE
Message-ID:  <201809280012.w8S0Cn1M049888@repo.freebsd.org>

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Author: wen
Date: Fri Sep 28 00:12:48 2018
New Revision: 480837
URL: https://svnweb.freebsd.org/changeset/ports/480837

Log:
  - Unbreak by adding missing pkg-plist
  
  PR:		228758
  Submitted by:	mzaki@niid.go.jp(maintainer)

Added:
  head/biology/tRNAscan-SE/pkg-plist   (contents, props changed)
Modified:
  head/biology/tRNAscan-SE/Makefile

Modified: head/biology/tRNAscan-SE/Makefile
==============================================================================
--- head/biology/tRNAscan-SE/Makefile	Thu Sep 27 23:28:15 2018	(r480836)
+++ head/biology/tRNAscan-SE/Makefile	Fri Sep 28 00:12:48 2018	(r480837)
@@ -14,8 +14,6 @@ COMMENT=	Searching for tRNA genes in genomic sequence
 LICENSE=	GPLv3+
 LICENSE_FILE=	${WRKSRC}/COPYING
 
-BROKEN=		missing plist
-
 RUN_DEPENDS=	cmsearch:biology/infernal
 
 WRKSRC=		${WRKDIR}/${DISTNAME:S,.0$,,}

Added: head/biology/tRNAscan-SE/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/tRNAscan-SE/pkg-plist	Fri Sep 28 00:12:48 2018	(r480837)
@@ -0,0 +1,136 @@
+bin/EukHighConfidenceFilter
+bin/covels-SE
+bin/coves-SE
+bin/eufindtRNA
+bin/fasta2gsi
+bin/sstofa
+bin/tRNAscan-SE
+bin/trnascan-1.4
+etc/tRNAscan-SE.conf
+%%DATADIR%%/gcode/gcode.cilnuc
+%%DATADIR%%/gcode/gcode.echdmito
+%%DATADIR%%/gcode/gcode.invmito
+%%DATADIR%%/gcode/gcode.othmito
+%%DATADIR%%/gcode/gcode.vertmito
+%%DATADIR%%/gcode/gcode.ystmito
+%%DATADIR%%/models/Cren-eury-BHB-noncan.cm
+%%DATADIR%%/models/Dsignal
+%%DATADIR%%/models/ESELC.cm
+%%DATADIR%%/models/PSELC.cm
+%%DATADIR%%/models/TPCsignal
+%%DATADIR%%/models/TRNA2-arch.cm
+%%DATADIR%%/models/TRNA2-archns.cm
+%%DATADIR%%/models/TRNA2-bact.cm
+%%DATADIR%%/models/TRNA2-bactns.cm
+%%DATADIR%%/models/TRNA2-euk.cm
+%%DATADIR%%/models/TRNA2-eukns.cm
+%%DATADIR%%/models/TRNA2.cm
+%%DATADIR%%/models/TRNA2ns.cm
+%%DATADIR%%/models/TRNAinf-1415-ns.cm
+%%DATADIR%%/models/TRNAinf-1415.cm
+%%DATADIR%%/models/TRNAinf-arch-3h.cm
+%%DATADIR%%/models/TRNAinf-arch-5h.cm
+%%DATADIR%%/models/TRNAinf-arch-SeC.cm
+%%DATADIR%%/models/TRNAinf-arch-iso
+%%DATADIR%%/models/TRNAinf-arch-iso.i1f
+%%DATADIR%%/models/TRNAinf-arch-iso.i1i
+%%DATADIR%%/models/TRNAinf-arch-iso.i1m
+%%DATADIR%%/models/TRNAinf-arch-iso.i1p
+%%DATADIR%%/models/TRNAinf-arch-ns.cm
+%%DATADIR%%/models/TRNAinf-arch.cm
+%%DATADIR%%/models/TRNAinf-bact-SeC.cm
+%%DATADIR%%/models/TRNAinf-bact-iso
+%%DATADIR%%/models/TRNAinf-bact-iso.i1f
+%%DATADIR%%/models/TRNAinf-bact-iso.i1i
+%%DATADIR%%/models/TRNAinf-bact-iso.i1m
+%%DATADIR%%/models/TRNAinf-bact-iso.i1p
+%%DATADIR%%/models/TRNAinf-bact-ns.cm
+%%DATADIR%%/models/TRNAinf-bact.cm
+%%DATADIR%%/models/TRNAinf-euk-SeC.cm
+%%DATADIR%%/models/TRNAinf-euk-iso
+%%DATADIR%%/models/TRNAinf-euk-iso.i1f
+%%DATADIR%%/models/TRNAinf-euk-iso.i1i
+%%DATADIR%%/models/TRNAinf-euk-iso.i1m
+%%DATADIR%%/models/TRNAinf-euk-iso.i1p
+%%DATADIR%%/models/TRNAinf-euk-ns.cm
+%%DATADIR%%/models/TRNAinf-euk.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal
+%%DATADIR%%/models/TRNAinf-mito-mammal-Ala.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Arg.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Asn.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Asp.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Cys.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Gln.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Glu.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Gly.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-His.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Ile.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-LeuTAA.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-LeuTAG.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Lys.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Met.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Phe.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Pro.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-SerGCT.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-SerTGA.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Thr.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Trp.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Tyr.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Val.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1f
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1i
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1m
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1p
+%%DATADIR%%/models/TRNAinf-mito-vert
+%%DATADIR%%/models/TRNAinf-mito-vert-Ala.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Arg.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Asn.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Asp.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Cys.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Gln.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Glu.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Gly.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-His.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Ile.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-LeuTAA.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-LeuTAG.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Lys.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Met.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Phe.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Pro.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-SerGCT.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-SerTGA.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Thr.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Trp.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Tyr.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Val.cm
+%%DATADIR%%/models/TRNAinf-mito-vert.i1f
+%%DATADIR%%/models/TRNAinf-mito-vert.i1i
+%%DATADIR%%/models/TRNAinf-mito-vert.i1m
+%%DATADIR%%/models/TRNAinf-mito-vert.i1p
+%%DATADIR%%/models/TRNAinf-ns.cm
+%%DATADIR%%/models/TRNAinf.cm
+%%DATADIR%%/models/Thaum-BHB-noncan.cm
+%%DATADIR%%/tRNAscanSE/ArrayCMscanResults.pm
+%%DATADIR%%/tRNAscanSE/ArraytRNA.pm
+%%DATADIR%%/tRNAscanSE/CM.pm
+%%DATADIR%%/tRNAscanSE/CMscanResultFile.pm
+%%DATADIR%%/tRNAscanSE/Configuration.pm
+%%DATADIR%%/tRNAscanSE/Eufind.pm
+%%DATADIR%%/tRNAscanSE/FpScanResultFile.pm
+%%DATADIR%%/tRNAscanSE/GeneticCode.pm
+%%DATADIR%%/tRNAscanSE/IntResultFile.pm
+%%DATADIR%%/tRNAscanSE/LogFile.pm
+%%DATADIR%%/tRNAscanSE/MultiResultFile.pm
+%%DATADIR%%/tRNAscanSE/Options.pm
+%%DATADIR%%/tRNAscanSE/ResultFileReader.pm
+%%DATADIR%%/tRNAscanSE/SS.pm
+%%DATADIR%%/tRNAscanSE/ScanResult.pm
+%%DATADIR%%/tRNAscanSE/Sequence.pm
+%%DATADIR%%/tRNAscanSE/SprinzlAlign.pm
+%%DATADIR%%/tRNAscanSE/SprinzlAlignResults.pm
+%%DATADIR%%/tRNAscanSE/SprinzlPos.pm
+%%DATADIR%%/tRNAscanSE/Stats.pm
+%%DATADIR%%/tRNAscanSE/Tscan.pm
+%%DATADIR%%/tRNAscanSE/Utils.pm
+%%DATADIR%%/tRNAscanSE/tRNA.pm



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