From owner-dev-commits-ports-all@freebsd.org Mon Jul 12 13:37:53 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 54375660ABC; Mon, 12 Jul 2021 13:37:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4GNlFY1Y6Sz3nJb; Mon, 12 Jul 2021 13:37:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 131E7785F; Mon, 12 Jul 2021 13:37:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 16CDbqu8035630; Mon, 12 Jul 2021 13:37:52 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 16CDbqB7035629; Mon, 12 Jul 2021 13:37:52 GMT (envelope-from git) Date: Mon, 12 Jul 2021 13:37:52 GMT Message-Id: <202107121337.16CDbqB7035629@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 1c1b4943aef7 - main - biology/samtools: Update to 1.13 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 1c1b4943aef7525da9e15fb8f419c08e2f8849bf Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 12 Jul 2021 13:37:53 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=1c1b4943aef7525da9e15fb8f419c08e2f8849bf commit 1c1b4943aef7525da9e15fb8f419c08e2f8849bf Author: Jason W. Bacon AuthorDate: 2021-07-12 13:24:26 +0000 Commit: Jason W. Bacon CommitDate: 2021-07-12 13:24:26 +0000 biology/samtools: Update to 1.13 Numerous enhancements and bug fixes Changes: https://github.com/samtools/samtools/releases/tag/1.13 --- biology/samtools/Makefile | 2 +- biology/samtools/distinfo | 6 +++--- biology/samtools/pkg-plist | 1 + 3 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 726a83ffcd7d..46edd3abaed1 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright PORTNAME= samtools -DISTVERSION= 1.12 +DISTVERSION= 1.13 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 08b69e957221..05b964d202a9 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112844 -SHA256 (samtools-samtools-1.12_GH0.tar.gz) = a31695aca88b6acf52e1b579d84edb6b54f7b1b22227aad1ef6c6ccdd10314cf -SIZE (samtools-samtools-1.12_GH0.tar.gz) = 4528460 +TIMESTAMP = 1626039854 +SHA256 (samtools-samtools-1.13_GH0.tar.gz) = 21621a2dd6f31b00c9184d31566e73a1c7fc0c1c2de62db125848fbdbc81448f +SIZE (samtools-samtools-1.13_GH0.tar.gz) = 4550467 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index 19b73d4ab8e7..8bfb1cbe8be8 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -39,6 +39,7 @@ man/man1/samtools-flags.1.gz man/man1/samtools-flagstat.1.gz man/man1/samtools-fqidx.1.gz man/man1/samtools-idxstats.1.gz +man/man1/samtools-import.1.gz man/man1/samtools-index.1.gz man/man1/samtools-markdup.1.gz man/man1/samtools-merge.1.gz