From nobody Wed Oct 13 16:04:51 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 9E14917FD678; Wed, 13 Oct 2021 16:04:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HTy6C2ychz4mW9; Wed, 13 Oct 2021 16:04:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 3ABCB2A97B; Wed, 13 Oct 2021 16:04:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 19DG4pXi007623; Wed, 13 Oct 2021 16:04:51 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 19DG4pDf007622; Wed, 13 Oct 2021 16:04:51 GMT (envelope-from git) Date: Wed, 13 Oct 2021 16:04:51 GMT Message-Id: <202110131604.19DG4pDf007622@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 06e26353b27a - main - biology/py-deeptoolsintervals: Python interface for deepTools interval trees List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 06e26353b27ad89d8b30d26865a330d4feeb58d9 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=06e26353b27ad89d8b30d26865a330d4feeb58d9 commit 06e26353b27ad89d8b30d26865a330d4feeb58d9 Author: Jason W. Bacon AuthorDate: 2021-10-13 16:01:52 +0000 Commit: Jason W. Bacon CommitDate: 2021-10-13 16:02:13 +0000 biology/py-deeptoolsintervals: Python interface for deepTools interval trees Deeptools_intervals is an interval tree backend designed to interface with deepTools, supporting metadata associated with each interval. --- biology/py-deeptoolsintervals/Makefile | 16 ++++++++++++++++ biology/py-deeptoolsintervals/distinfo | 3 +++ biology/py-deeptoolsintervals/files/patch-setup.py | 11 +++++++++++ biology/py-deeptoolsintervals/pkg-descr | 4 ++++ 4 files changed, 34 insertions(+) diff --git a/biology/py-deeptoolsintervals/Makefile b/biology/py-deeptoolsintervals/Makefile new file mode 100644 index 000000000000..e6ebc1066803 --- /dev/null +++ b/biology/py-deeptoolsintervals/Makefile @@ -0,0 +1,16 @@ +PORTNAME= deeptoolsintervals +DISTVERSION= 0.1.9 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python interface for deepTools interval trees + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= python +USE_PYTHON= autoplist distutils + +.include diff --git a/biology/py-deeptoolsintervals/distinfo b/biology/py-deeptoolsintervals/distinfo new file mode 100644 index 000000000000..9933b91e8868 --- /dev/null +++ b/biology/py-deeptoolsintervals/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1617289403 +SHA256 (deeptoolsintervals-0.1.9.tar.gz) = 7d94c36fd2b6f10d8b99e536d2672e8228971f1fc810497d33527bba2c40d4f6 +SIZE (deeptoolsintervals-0.1.9.tar.gz) = 41123 diff --git a/biology/py-deeptoolsintervals/files/patch-setup.py b/biology/py-deeptoolsintervals/files/patch-setup.py new file mode 100644 index 000000000000..d8d41de78a6e --- /dev/null +++ b/biology/py-deeptoolsintervals/files/patch-setup.py @@ -0,0 +1,11 @@ +--- setup.py.orig 2021-10-13 15:57:11 UTC ++++ setup.py +@@ -32,7 +32,7 @@ setup(name='deeptoolsintervals', + author_email="ryan@ie-freiburg.mpg.de", + url="https://github.com/deeptools/deeptools_intervals", + keywords=["bioinformatics", "GTF"], +- classifier=["Development Status :: 5 - Production/Stable", ++ classifiers=["Development Status :: 5 - Production/Stable", + "Environment :: Console", + "License :: OSI Approved :: MIT License", + "Intended Audience :: Developers", diff --git a/biology/py-deeptoolsintervals/pkg-descr b/biology/py-deeptoolsintervals/pkg-descr new file mode 100644 index 000000000000..368b6da1a905 --- /dev/null +++ b/biology/py-deeptoolsintervals/pkg-descr @@ -0,0 +1,4 @@ +Deeptools_intervals is an interval tree backend designed to interface +with deepTools, supporting metadata associated with each interval. + +WWW: https://github.com/deeptools/deeptools_intervals