From owner-svn-ports-head@freebsd.org Sat Feb 13 14:13:56 2016 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id BD13BAA6EEB; Sat, 13 Feb 2016 14:13:56 +0000 (UTC) (envelope-from dbn@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 9814515B0; Sat, 13 Feb 2016 14:13:56 +0000 (UTC) (envelope-from dbn@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id u1DEDtbF037912; Sat, 13 Feb 2016 14:13:55 GMT (envelope-from dbn@FreeBSD.org) Received: (from dbn@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id u1DEDtqH037909; Sat, 13 Feb 2016 14:13:55 GMT (envelope-from dbn@FreeBSD.org) Message-Id: <201602131413.u1DEDtqH037909@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: dbn set sender to dbn@FreeBSD.org using -f From: David Naylor Date: Sat, 13 Feb 2016 14:13:55 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r408798 - head/math/R-cran-car X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 13 Feb 2016 14:13:56 -0000 Author: dbn Date: Sat Feb 13 14:13:55 2016 New Revision: 408798 URL: https://svnweb.freebsd.org/changeset/ports/408798 Log: math/R-cran-car: update to 2.1-1. Changes: * Use explicit pkg-plist instead of autoplist. Using an explicit pkg-plist is more robust against "silent" errors or changes. ChangeLog: - influencePlot now returns Cook's distance, not its square root. - Anova() now supports "coxme" objects (produced by coxme() in coxme package) (request of Philipp Sprenger). - Anova() now works via its default method with "vglm" objects produced by functions in the VGAM package; and the default method of linearHypothesis() again works with these objects (problem reported by Michael Friendly). - Fixed Anova.coxph() so that it takes account of method (ties) argument (bug reported by Karl Ove Hufthammer). - Improvements to Anova.default() so that a wider variety of model classes are accommodated (following request of Liviu Andronic.) - dataEllipse() now throws an error if there are too few colors for the number of groups (fixing bug reported by Ottorino Pantani). - spreadLevelPlot.lm() now includes an optional smoother in addition to the fitted straight line (suggestion of Michael Friendly). - No longer import methods (as opposed to generics) directly from pbkrtest. - Added axis.ticks argument to scatter3d() (code contributed by David Winsemius). Added: head/math/R-cran-car/pkg-plist (contents, props changed) Modified: head/math/R-cran-car/Makefile head/math/R-cran-car/distinfo Modified: head/math/R-cran-car/Makefile ============================================================================== --- head/math/R-cran-car/Makefile Sat Feb 13 14:03:55 2016 (r408797) +++ head/math/R-cran-car/Makefile Sat Feb 13 14:13:55 2016 (r408798) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= car -DISTVERSION= 2.1-0 +DISTVERSION= 2.1-1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} @@ -15,6 +15,6 @@ LICENSE_COMB= dual RUN_DEPENDS= R-cran-pbkrtest>=0.3.2:${PORTSDIR}/math/R-cran-pbkrtest \ R-cran-quantreg>0:${PORTSDIR}/math/R-cran-quantreg -USES= cran:auto-plist +USES= cran .include Modified: head/math/R-cran-car/distinfo ============================================================================== --- head/math/R-cran-car/distinfo Sat Feb 13 14:03:55 2016 (r408797) +++ head/math/R-cran-car/distinfo Sat Feb 13 14:13:55 2016 (r408798) @@ -1,2 +1,2 @@ -SHA256 (car_2.1-0.tar.gz) = b2f98c0b03523727a94fe5a193eef96a70565202d7b646310ce65ee31176a61c -SIZE (car_2.1-0.tar.gz) = 617582 +SHA256 (car_2.1-1.tar.gz) = 9d032939079e853552ce70cb0a738d6fb097447c63234f697e1b52cfaef0eff3 +SIZE (car_2.1-1.tar.gz) = 619595 Added: head/math/R-cran-car/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/R-cran-car/pkg-plist Sat Feb 13 14:13:55 2016 (r408798) @@ -0,0 +1,29 @@ +%%R_MOD_DIR%%/CITATION +%%R_MOD_DIR%%/DESCRIPTION +%%R_MOD_DIR%%/INDEX +%%R_MOD_DIR%%/Meta/Rd.rds +%%R_MOD_DIR%%/Meta/data.rds +%%R_MOD_DIR%%/Meta/hsearch.rds +%%R_MOD_DIR%%/Meta/links.rds +%%R_MOD_DIR%%/Meta/nsInfo.rds +%%R_MOD_DIR%%/Meta/package.rds +%%R_MOD_DIR%%/Meta/vignette.rds +%%R_MOD_DIR%%/NAMESPACE +%%R_MOD_DIR%%/NEWS +%%R_MOD_DIR%%/R/car +%%R_MOD_DIR%%/R/car.rdb +%%R_MOD_DIR%%/R/car.rdx +%%R_MOD_DIR%%/data/Rdata.rdb +%%R_MOD_DIR%%/data/Rdata.rds +%%R_MOD_DIR%%/data/Rdata.rdx +%%R_MOD_DIR%%/doc/embedding.R +%%R_MOD_DIR%%/doc/embedding.Rnw +%%R_MOD_DIR%%/doc/embedding.pdf +%%R_MOD_DIR%%/doc/index.html +%%R_MOD_DIR%%/help/AnIndex +%%R_MOD_DIR%%/help/aliases.rds +%%R_MOD_DIR%%/help/car.rdb +%%R_MOD_DIR%%/help/car.rdx +%%R_MOD_DIR%%/help/paths.rds +%%R_MOD_DIR%%/html/00Index.html +%%R_MOD_DIR%%/html/R.css