Date: Mon, 7 May 2001 11:53:15 +0200 (SAST) From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/27176: Port update: biology/fasta3 (MAINTAINER) Message-ID: <200105070953.f479rFC58097@shuffle.egenetics.com>
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>Number: 27176 >Category: ports >Synopsis: Port update: biology/fasta3 (MAINTAINER) >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Mon May 07 03:00:01 PDT 2001 >Closed-Date: >Last-Modified: >Originator: Johann Visagie >Release: FreeBSD 5.0-CURRENT i386 >Organization: Electric Genetics >Environment: >Description: - Updata biology/fasta3 to version 33.t08.d4 >How-To-Repeat: >Fix: diff -ruN fasta3.bak/Makefile fasta3/Makefile --- fasta3.bak/Makefile Mon May 7 11:51:51 2001 +++ fasta3/Makefile Mon May 7 11:28:00 2001 @@ -6,7 +6,7 @@ # PORTNAME= fasta3 -PORTVERSION= 33.t08.d3 +PORTVERSION= 33.t08.d4 CATEGORIES= biology MASTER_SITES= http://ftp.virginia.edu/pub/fasta/ DISTNAME= fasta${PORTVERSION:S/.//g} diff -ruN fasta3.bak/distinfo fasta3/distinfo --- fasta3.bak/distinfo Mon May 7 11:51:51 2001 +++ fasta3/distinfo Mon May 7 11:29:34 2001 @@ -1 +1 @@ -MD5 (fasta33t08d3.shar.Z) = 4fc71c3f7f4f8f42c3e6fb9899bf29ae +MD5 (fasta33t08d4.shar.Z) = 66f0c4731a6ff1cf123067c6ec46e352 diff -ruN fasta3.bak/files/patch-Makefile fasta3/files/patch-Makefile --- fasta3.bak/files/patch-Makefile Mon May 7 11:51:51 2001 +++ fasta3/files/patch-Makefile Mon May 7 11:40:59 2001 @@ -1,5 +1,5 @@ ---- Makefile.orig Mon Jan 29 13:44:28 2001 -+++ Makefile Mon Jan 29 14:08:43 2001 +--- Makefile.orig Mon May 7 11:36:23 2001 ++++ Makefile Mon May 7 11:40:36 2001 @@ -12,13 +12,13 @@ # use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files @@ -11,8 +11,8 @@ #CC= gcc -g -Wall # # standard line for normal searching --CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -+CFLAGS+= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN +-CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP ++CFLAGS+= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP # -I/usr/local/include/mysql -DMYSQL_DB #(for mySQL databases) (also requires change to Makefile33.common) @@ -30,7 +30,7 @@ +#THR_SUBS = pthr_subs +#THR_LIBS = -threads +#THR_CC = -+ ++# #for Sun #THR_SUBS = uthr_subs #THR_LIBS = -lthread @@ -43,7 +43,7 @@ # renamed (fasta33) programs -include Makefile33.common -+# include Makefile33.common ++#include Makefile33.common # conventional (fasta3) names -#include Makefile.common +include Makefile.common >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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