From owner-svn-ports-head@FreeBSD.ORG Thu Nov 28 15:05:09 2013 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 891AFAAB; Thu, 28 Nov 2013 15:05:09 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 73B8612FD; Thu, 28 Nov 2013 15:05:09 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.7/8.14.7) with ESMTP id rASF59jj081262; Thu, 28 Nov 2013 15:05:09 GMT (envelope-from jadawin@svn.freebsd.org) Received: (from jadawin@localhost) by svn.freebsd.org (8.14.7/8.14.5/Submit) id rASF58Oe081259; Thu, 28 Nov 2013 15:05:08 GMT (envelope-from jadawin@svn.freebsd.org) Message-Id: <201311281505.rASF58Oe081259@svn.freebsd.org> From: Philippe Audeoud Date: Thu, 28 Nov 2013 15:05:08 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r335098 - head/biology/p5-Bio-MAGETAB X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.16 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 28 Nov 2013 15:05:09 -0000 Author: jadawin Date: Thu Nov 28 15:05:08 2013 New Revision: 335098 URL: http://svnweb.freebsd.org/changeset/ports/335098 Log: - Update to 1.28 Sponsored by: OBS Modified: head/biology/p5-Bio-MAGETAB/Makefile head/biology/p5-Bio-MAGETAB/distinfo head/biology/p5-Bio-MAGETAB/pkg-plist (contents, props changed) Modified: head/biology/p5-Bio-MAGETAB/Makefile ============================================================================== --- head/biology/p5-Bio-MAGETAB/Makefile Thu Nov 28 14:56:08 2013 (r335097) +++ head/biology/p5-Bio-MAGETAB/Makefile Thu Nov 28 15:05:08 2013 (r335098) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= Bio-MAGETAB -PORTVERSION= 1.27 +PORTVERSION= 1.28 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -29,65 +29,6 @@ TEST_DEPENDS= p5-Test-Exception>=0.26:${ USES= perl5 USE_PERL5= configure -MAN3= Bio::MAGETAB.3 \ - Bio::MAGETAB::ArrayDesign.3 \ - Bio::MAGETAB::Assay.3 \ - Bio::MAGETAB::BaseClass.3 \ - Bio::MAGETAB::Comment.3 \ - Bio::MAGETAB::CompositeElement.3 \ - Bio::MAGETAB::Contact.3 \ - Bio::MAGETAB::ControlledTerm.3 \ - Bio::MAGETAB::Data.3 \ - Bio::MAGETAB::DataAcquisition.3 \ - Bio::MAGETAB::DataFile.3 \ - Bio::MAGETAB::DataMatrix.3 \ - Bio::MAGETAB::DatabaseEntry.3 \ - Bio::MAGETAB::DesignElement.3 \ - Bio::MAGETAB::Edge.3 \ - Bio::MAGETAB::Event.3 \ - Bio::MAGETAB::Extract.3 \ - Bio::MAGETAB::Factor.3 \ - Bio::MAGETAB::FactorValue.3 \ - Bio::MAGETAB::Feature.3 \ - Bio::MAGETAB::Investigation.3 \ - Bio::MAGETAB::LabeledExtract.3 \ - Bio::MAGETAB::Material.3 \ - Bio::MAGETAB::MatrixColumn.3 \ - Bio::MAGETAB::MatrixRow.3 \ - Bio::MAGETAB::Measurement.3 \ - Bio::MAGETAB::Node.3 \ - Bio::MAGETAB::Normalization.3 \ - Bio::MAGETAB::ParameterValue.3 \ - Bio::MAGETAB::Protocol.3 \ - Bio::MAGETAB::ProtocolApplication.3 \ - Bio::MAGETAB::ProtocolParameter.3 \ - Bio::MAGETAB::Publication.3 \ - Bio::MAGETAB::Reporter.3 \ - Bio::MAGETAB::SDRF.3 \ - Bio::MAGETAB::SDRFRow.3 \ - Bio::MAGETAB::Sample.3 \ - Bio::MAGETAB::Source.3 \ - Bio::MAGETAB::TermSource.3 \ - Bio::MAGETAB::Types.3 \ - Bio::MAGETAB::Util::Builder.3 \ - Bio::MAGETAB::Util::DBLoader.3 \ - Bio::MAGETAB::Util::Persistence.3 \ - Bio::MAGETAB::Util::Reader.3 \ - Bio::MAGETAB::Util::Reader::ADF.3 \ - Bio::MAGETAB::Util::Reader::DataMatrix.3 \ - Bio::MAGETAB::Util::Reader::IDF.3 \ - Bio::MAGETAB::Util::Reader::SDRF.3 \ - Bio::MAGETAB::Util::Reader::Tabfile.3 \ - Bio::MAGETAB::Util::Reader::TagValueFile.3 \ - Bio::MAGETAB::Util::RewriteAE.3 \ - Bio::MAGETAB::Util::Writer.3 \ - Bio::MAGETAB::Util::Writer::ADF.3 \ - Bio::MAGETAB::Util::Writer::GraphViz.3 \ - Bio::MAGETAB::Util::Writer::IDF.3 \ - Bio::MAGETAB::Util::Writer::SDRF.3 \ - Bio::MAGETAB::Util::Writer::Tabfile.3 - -NO_STAGE= yes post-patch: @${REINPLACE_CMD} -e '/^auto_install;/d' ${WRKSRC}/Makefile.PL Modified: head/biology/p5-Bio-MAGETAB/distinfo ============================================================================== --- head/biology/p5-Bio-MAGETAB/distinfo Thu Nov 28 14:56:08 2013 (r335097) +++ head/biology/p5-Bio-MAGETAB/distinfo Thu Nov 28 15:05:08 2013 (r335098) @@ -1,2 +1,2 @@ -SHA256 (Bio-MAGETAB-1.27.tar.gz) = 46017303ce51f8ba749d363cd763792273df96602d28f1d2de5c2947530cdb4d -SIZE (Bio-MAGETAB-1.27.tar.gz) = 254374 +SHA256 (Bio-MAGETAB-1.28.tar.gz) = 75e0e52300400bb6e73d2593ac29ef87fcf28653c0a7a039c2c937abcedb5a08 +SIZE (Bio-MAGETAB-1.28.tar.gz) = 260154 Modified: head/biology/p5-Bio-MAGETAB/pkg-plist ============================================================================== --- head/biology/p5-Bio-MAGETAB/pkg-plist Thu Nov 28 14:56:08 2013 (r335097) +++ head/biology/p5-Bio-MAGETAB/pkg-plist Thu Nov 28 15:05:08 2013 (r335098) @@ -60,6 +60,63 @@ bin/unload_magetab_namespace.pl %%SITE_PERL%%/Bio/MAGETAB/FactorValue.pm %%SITE_PERL%%/Bio/MAGETAB/DataMatrix.pm %%SITE_PERL%%/Bio/MAGETAB.pm +%%PERL5_MAN3%%/Bio::MAGETAB.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::ArrayDesign.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Assay.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::BaseClass.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Comment.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::CompositeElement.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Contact.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::ControlledTerm.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Data.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::DataAcquisition.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::DataFile.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::DataMatrix.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::DatabaseEntry.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::DesignElement.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Edge.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Event.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Extract.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Factor.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::FactorValue.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Feature.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Investigation.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::LabeledExtract.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Material.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::MatrixColumn.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::MatrixRow.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Measurement.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Node.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Normalization.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::ParameterValue.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Protocol.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::ProtocolApplication.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::ProtocolParameter.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Publication.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Reporter.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::SDRF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::SDRFRow.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Sample.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Source.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::TermSource.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Types.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Builder.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::DBLoader.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Persistence.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::ADF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::DataMatrix.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::IDF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::SDRF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::Tabfile.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::TagValueFile.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::RewriteAE.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::ADF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::GraphViz.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::IDF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::SDRF.3.gz +%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::Tabfile.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/MAGETAB @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio @dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader