From owner-freebsd-ports Wed Sep 30 02:30:14 1998 Return-Path: Received: (from majordom@localhost) by hub.freebsd.org (8.8.8/8.8.8) id CAA02325 for freebsd-ports-outgoing; Wed, 30 Sep 1998 02:30:14 -0700 (PDT) (envelope-from owner-freebsd-ports@FreeBSD.ORG) Received: from freefall.freebsd.org (freefall.FreeBSD.ORG [204.216.27.21]) by hub.freebsd.org (8.8.8/8.8.8) with ESMTP id CAA02316 for ; Wed, 30 Sep 1998 02:30:06 -0700 (PDT) (envelope-from gnats@FreeBSD.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.8.8/8.8.5) id CAA17230; Wed, 30 Sep 1998 02:30:01 -0700 (PDT) Received: from universe.serc.rmit.edu.au (universe.serc.rmit.edu.au [131.170.42.12]) by hub.freebsd.org (8.8.8/8.8.8) with ESMTP id CAA01789 for ; Wed, 30 Sep 1998 02:26:10 -0700 (PDT) (envelope-from maurice@planetoid.serc.rmit.edu.au) Received: from planetoid.serc.rmit.edu.au (planetoid.serc.rmit.edu.au [131.170.42.70]) by universe.serc.rmit.edu.au (8.8.5/8.8.5) with ESMTP id TAA17701 for ; Wed, 30 Sep 1998 19:25:53 +1000 (EST) Received: (from maurice@localhost) by planetoid.serc.rmit.edu.au (8.8.7/8.8.5) id TAA24337; Wed, 30 Sep 1998 19:25:51 +1000 (EST) Message-Id: <199809300925.TAA24337@planetoid.serc.rmit.edu.au> Date: Wed, 30 Sep 1998 19:25:51 +1000 (EST) From: Maurice Castro Reply-To: maurice@serc.rmit.edu.au To: FreeBSD-gnats-submit@FreeBSD.ORG X-Send-Pr-Version: 3.2 Subject: ports/8098: Update of R port Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk X-Loop: FreeBSD.org >Number: 8098 >Category: ports >Synopsis: Update of R port >Confidential: no >Severity: serious >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Wed Sep 30 02:30:00 PDT 1998 >Last-Modified: >Originator: Maurice Castro >Organization: Software Engineering Research Centre >Release: FreeBSD 2.2.2-RELEASE i386 >Environment: All versions >Description: Update of R port to version 0.62.3 >How-To-Repeat: Full shar file included (diffs resulted in minimal savings) >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # r-0.62.3 # r-0.62.3/files # r-0.62.3/files/R # r-0.62.3/files/md5 # r-0.62.3/pkg # r-0.62.3/pkg/COMMENT # r-0.62.3/pkg/DESCR # r-0.62.3/pkg/PLIST # r-0.62.3/patches # r-0.62.3/patches/patch-aa # r-0.62.3/patches/patch-ab # r-0.62.3/Makefile # echo c - r-0.62.3 mkdir -p r-0.62.3 > /dev/null 2>&1 echo c - r-0.62.3/files mkdir -p r-0.62.3/files > /dev/null 2>&1 echo x - r-0.62.3/files/R sed 's/^X//' >r-0.62.3/files/R << 'END-of-r-0.62.3/files/R' X#!/bin/sh X# Shell wrapper for R executable. X XRHOME=PREFIX/lib/R Xexport RHOME X XARG=$1 Xcase ${ARG} in X RHOME) X echo ${RHOME}; exit 0 ;; X CMD) X shift; PATH=$PATH:$RHOME/cmd:$RHOME/etc exec $* ;; X SHLIB|COMPILE|INSTALL|REMOVE) X shift; exec sh ${RHOME}/etc/${ARG} $* ;; X -d|--debugger) X exec $2 ${RHOME}/bin/R.binary ;; X -h|--help|-\?) X echo "Usage: R [OPTIONS] [< INFILE] [> OUTFILE]" X echo "" X echo "Options:" X echo " --save Do save data sets at the end of the session." X echo " --no-save Don't save them." X echo " --restore Do restore previously saved data sets at startup." X echo " --no-restore Don't restore them." X echo " --no-readline Don't use readline for command-line editing." X echo " --no-site-file Don't read the site-wide Rprofile." X echo " --no-init-file Don't read the .Rprofile or ~/.Rprofile files." X echo " -v N Set the vector heap size to N megabytes." X echo " -n N Set the number of cons cells to N." X echo " -h, --help, -? Print short help message and exit." X echo " -q, --quiet Make R run as quietly as possible." X echo " -V, --version Print version info and exit." X echo " -d NAME, --debugger NAME Run R through debugger NAME." X exit 0 ;; Xesac X X# Default Printer Paper Size X# Choose one of the following X# R_PAPERSIZE="a4" X# R_PAPERSIZE="letter" X# R_PAPERSIZE="none" XR_PAPERSIZE=DEFAULTPAPER Xexport R_PAPERSIZE X X# Default Print Command X# Choose one of the following X# R_PRINTCMD="lpr" X# R_PRINTCMD="lp" XR_PRINTCMD=lpr Xexport R_PRINTCMD X Xexec ${RHOME}/bin/R.binary $* END-of-r-0.62.3/files/R echo x - r-0.62.3/files/md5 sed 's/^X//' >r-0.62.3/files/md5 << 'END-of-r-0.62.3/files/md5' XMD5 (R-0.62.3.tgz) = 276b579ec819e3fbc7169d3a0f0a0f8c END-of-r-0.62.3/files/md5 echo c - r-0.62.3/pkg mkdir -p r-0.62.3/pkg > /dev/null 2>&1 echo x - r-0.62.3/pkg/COMMENT sed 's/^X//' >r-0.62.3/pkg/COMMENT << 'END-of-r-0.62.3/pkg/COMMENT' XR a language for statistics similar to AT&T's S END-of-r-0.62.3/pkg/COMMENT echo x - r-0.62.3/pkg/DESCR sed 's/^X//' >r-0.62.3/pkg/DESCR << 'END-of-r-0.62.3/pkg/DESCR' XR is a language which is not entirely unlike the S language developed Xat AT&T Bell Laboratories by Rick Becker, John Chambers and Allan XWilks. X XR is free software distributed under a GNU-style copyleft. X XThis port has most of the functionality in the first S book (the X"Blue Book") and many of the applications. In addition, a certain Xamount of functionality from the second S book (the "White Book") Xhas been implemented. In particular functioning versions of "lm" Xand "glm" and their associated "summary" and "anova" methods are Xprovided. END-of-r-0.62.3/pkg/DESCR echo x - r-0.62.3/pkg/PLIST sed 's/^X//' >r-0.62.3/pkg/PLIST << 'END-of-r-0.62.3/pkg/PLIST' X@exec mkdir %D/lib/R X@exec mkdir %D/lib/R/bin X@exec mkdir %D/lib/R/cmd X@exec mkdir %D/lib/R/etc X@exec mkdir %D/lib/R/include X@exec mkdir %D/lib/R/library X@exec mkdir %D/lib/R/library/base X@exec mkdir %D/lib/R/library/base/R X@exec mkdir %D/lib/R/library/base/data X@exec mkdir %D/lib/R/library/base/help X@exec mkdir %D/lib/R/library/base/html X@exec mkdir %D/lib/R/library/base/latex X@exec mkdir %D/lib/R/library/eda X@exec mkdir %D/lib/R/library/eda/libs X@exec mkdir %D/lib/R/library/eda/R X@exec mkdir %D/lib/R/library/eda/help X@exec mkdir %D/lib/R/library/eda/html X@exec mkdir %D/lib/R/library/eda/latex X@exec mkdir %D/lib/R/library/mva X@exec mkdir %D/lib/R/library/mva/libs X@exec mkdir %D/lib/R/library/mva/R X@exec mkdir %D/lib/R/library/mva/help X@exec mkdir %D/lib/R/library/mva/html X@exec mkdir %D/lib/R/library/mva/latex X@exec mkdir %D/lib/R/library/stepfun X@exec mkdir %D/lib/R/library/stepfun/R X@exec mkdir %D/lib/R/library/stepfun/help X@exec mkdir %D/lib/R/library/stepfun/html X@exec mkdir %D/lib/R/library/stepfun/latex X@exec mkdir %D/lib/R/afm X@exec mkdir %D/lib/R/demos X@exec mkdir %D/lib/R/demos/dynload X@exec mkdir %D/lib/R/demos/graphics X@exec mkdir %D/lib/R/demos/language X@exec mkdir %D/lib/R/demos/models X@exec mkdir %D/lib/R/demos/nlm X@exec mkdir %D/lib/R/doc X@exec mkdir %D/lib/R/doc/manual X@exec mkdir %D/lib/R/doc/html X@exec mkdir %D/lib/R/doc/html/search Xbin/R Xbin/Rd2txt Xbin/Rdconv Xbin/Rdindex Xbin/Sd2Rd Xetc/ssh_random_seed Xlib/R/bin/R.binary Xlib/R/cmd/filename Xlib/R/cmd/fwf2table Xlib/R/cmd/help Xlib/R/cmd/loadpath Xlib/R/cmd/pager Xlib/R/etc/COMPILE Xlib/R/etc/INSTALL Xlib/R/etc/REMOVE Xlib/R/etc/SHLIB Xlib/R/etc/Rd2dvi Xlib/R/etc/Rd2txt Xlib/R/etc/Rdconv Xlib/R/etc/Rdindex Xlib/R/etc/Rman2Rd Xlib/R/etc/Sd2Rd Xlib/R/etc/build-help Xlib/R/etc/help.pretty Xlib/R/etc/buildlib.pl 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Xlib/R/library/base/data/nhtemp.R Xlib/R/library/base/data/mtcars.R Xlib/R/library/base/data/longley.R Xlib/R/library/base/data/judges.R Xlib/R/library/base/data/islands.R Xlib/R/library/base/data/iris3.R Xlib/R/library/base/data/iris.R Xlib/R/library/base/data/insects.R Xlib/R/library/base/data/infert.R Xlib/R/library/base/data/index.doc Xlib/R/library/base/data/freeny.R Xlib/R/library/base/data/faithful.R Xlib/R/library/base/data/eurodist.R Xlib/R/library/base/data/esoph.R Xlib/R/library/base/data/discoveries.R Xlib/R/library/base/data/deaths.R Xlib/R/library/base/data/crimes.tab Xlib/R/library/base/data/consume.R Xlib/R/library/base/data/chickwts.R Xlib/R/library/base/data/cars.R Xlib/R/library/base/data/bees.R Xlib/R/library/base/data/attitude.R Xlib/R/library/base/data/attenu.R Xlib/R/library/base/data/anscombe.R Xlib/R/library/base/data/airquality.tab Xlib/R/library/base/data/airmiles.R Xlib/R/library/base/data/women.R Xlib/R/library/base/TITLE Xlib/R/library/base/INDEX 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Xlib/R/library/base/help/c Xlib/R/library/base/help/call Xlib/R/library/base/help/cars Xlib/R/library/base/help/case.names Xlib/R/library/base/help/cat Xlib/R/library/base/help/cbind Xlib/R/library/base/help/character Xlib/R/library/base/help/charmatch Xlib/R/library/base/help/chickwts Xlib/R/library/base/help/chisq.test Xlib/R/library/base/help/chol Xlib/R/library/base/help/chol2inv Xlib/R/library/base/help/class Xlib/R/library/base/help/codes Xlib/R/library/base/help/coefficients Xlib/R/library/base/help/col Xlib/R/library/base/help/colnames Xlib/R/library/base/help/colors Xlib/R/library/base/help/comment Xlib/R/library/base/help/complete.cases Xlib/R/library/base/help/complex Xlib/R/library/base/help/consume Xlib/R/library/base/help/contour Xlib/R/library/base/help/contrast Xlib/R/library/base/help/contrasts Xlib/R/library/base/help/coplot Xlib/R/library/base/help/contributors Xlib/R/library/base/help/convolve Xlib/R/library/base/help/cor Xlib/R/library/base/help/count.fields Xlib/R/library/base/help/cov.wt Xlib/R/library/base/help/crimes Xlib/R/library/base/help/crossprod Xlib/R/library/base/help/cumsum Xlib/R/library/base/help/curve Xlib/R/library/base/help/cut Xlib/R/library/base/help/data Xlib/R/library/base/help/data.class Xlib/R/library/base/help/data.frame Xlib/R/library/base/help/data.matrix Xlib/R/library/base/help/dataentry Xlib/R/library/base/help/date Xlib/R/library/base/help/deaths Xlib/R/library/base/help/debug Xlib/R/library/base/help/delay Xlib/R/library/base/help/delete.response Xlib/R/library/base/help/demo Xlib/R/library/base/help/density Xlib/R/library/base/help/deparse Xlib/R/library/base/help/deriv Xlib/R/library/base/help/detach Xlib/R/library/base/help/dev Xlib/R/library/base/help/dev2 Xlib/R/library/base/help/deviance Xlib/R/library/base/help/df.residual Xlib/R/library/base/help/diag Xlib/R/library/base/help/diff Xlib/R/library/base/help/dim Xlib/R/library/base/help/dimnames Xlib/R/library/base/help/discoveries 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X@dirrm lib/R/library/base/help X@dirrm lib/R/library/base/html X@dirrm lib/R/library/base/latex X@dirrm lib/R/library/base X@dirrm lib/R/library/eda/libs X@dirrm lib/R/library/eda/R X@dirrm lib/R/library/eda/help X@dirrm lib/R/library/eda/html X@dirrm lib/R/library/eda/latex X@dirrm lib/R/library/eda X@dirrm lib/R/library/mva/libs X@dirrm lib/R/library/mva/R X@dirrm lib/R/library/mva/help X@dirrm lib/R/library/mva/html X@dirrm lib/R/library/mva/latex X@dirrm lib/R/library/mva X@dirrm lib/R/library/stepfun/R X@dirrm lib/R/library/stepfun/help X@dirrm lib/R/library/stepfun/html X@dirrm lib/R/library/stepfun/latex X@dirrm lib/R/library/stepfun X@dirrm lib/R/bin X@dirrm lib/R/cmd X@dirrm lib/R/etc X@dirrm lib/R/include X@dirrm lib/R/library X@dirrm lib/R/afm X@dirrm lib/R/demos/dynload X@dirrm lib/R/demos/graphics X@dirrm lib/R/demos/language X@dirrm lib/R/demos/models X@dirrm lib/R/demos/nlm X@dirrm lib/R/demos X@dirrm lib/R/doc/manual X@dirrm lib/R/doc/html/search X@dirrm lib/R/doc/html X@dirrm lib/R/doc X@dirrm lib/R END-of-r-0.62.3/pkg/PLIST echo c - r-0.62.3/patches mkdir -p r-0.62.3/patches > /dev/null 2>&1 echo x - r-0.62.3/patches/patch-aa sed 's/^X//' >r-0.62.3/patches/patch-aa << 'END-of-r-0.62.3/patches/patch-aa' X*** Makefile.2nd.orig Wed Sep 30 18:00:25 1998 X--- Makefile.2nd Wed Sep 30 18:00:53 1998 X*************** X*** 77,83 **** X cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(bindir)/R X chmod 755 $(bindir)/R X for f in `ls cmd/[a-z]* | grep -v '.*\.in'`; \ X! do $(INSTALL_PROGRAM) $$f $(rhome)/cmd; done X cd demos; $(MAKE) $@ X cd doc; $(MAKE) $@ X cd etc; $(MAKE) $@ X--- 77,83 ---- X cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(bindir)/R X chmod 755 $(bindir)/R X for f in `ls cmd/[a-z]* | grep -v '.*\.in'`; \ X! do $(INSTALL_DATA) $$f $(rhome)/cmd; done X cd demos; $(MAKE) $@ X cd doc; $(MAKE) $@ X cd etc; $(MAKE) $@ END-of-r-0.62.3/patches/patch-aa echo x - r-0.62.3/patches/patch-ab sed 's/^X//' >r-0.62.3/patches/patch-ab << 'END-of-r-0.62.3/patches/patch-ab' X*** etc/Makefile.orig Wed Sep 30 18:17:29 1998 X--- etc/Makefile Wed Sep 30 18:18:09 1998 X*************** X*** 68,72 **** X do $(INSTALL_DATA) $$f $(rhome)/etc; \ X done X for f in Rd2txt Rdconv Rdindex Sd2Rd; \ X! do $(INSTALL_PROGRAM) $$f $(bindir); \ X done X--- 68,72 ---- X do $(INSTALL_DATA) $$f $(rhome)/etc; \ X done X for f in Rd2txt Rdconv Rdindex Sd2Rd; \ X! do $(INSTALL_DATA) $$f $(bindir); \ X done END-of-r-0.62.3/patches/patch-ab echo x - r-0.62.3/Makefile sed 's/^X//' >r-0.62.3/Makefile << 'END-of-r-0.62.3/Makefile' X# New ports collection makefile for: R X# Version required: R-0.62.2 X# Date created: Tue Jun 23 07:36:55 EST 1998 X# Whom: Maurice Castro X# X# $Id: Makefile,v 1.4 1998/07/02 06:27:40 asami Exp $ X# X XDISTNAME= R-0.62.3 XPKGNAME= R-${PAPERSIZE:S/A4/a4/:S/LETTER/letter/:S/Letter/letter/}-0.62.3 XCATEGORIES= math XMASTER_SITES= http://lib.stat.cmu.edu/R/CRAN/src/base/ \ X ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \ X http://cran.stat.wisc.edu/src/base/ \ X ftp://ftp.ci.tuwien.ac.at/R/src/base/ \ X http://SunSITE.auc.dk/R/src/base/ \ X http://www.stat.unipg.it/pub/stat/statlib/R/CRAN/src/base/ \ X ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \ X ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \ X http://www.stat.math.ethz.ch/R-CRAN/src/base/ XEXTRACT_SUFX= .tgz X XMAINTAINER= maurice@serc.rmit.edu.au X XGNU_CONFIGURE= yes XUSE_PERL5= yes X XMANUAL_PACKAGE_BUILD= PAPERSIZE has to be set to Letter A4 XCONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} X X.if !defined(PAPERSIZE) XPAPERSIZE=a4 X.elif ${PAPERSIZE} == LETTER || ${PAPERSIZE} == Letter XPAPERSIZE=letter X.elif ${PAPERSIZE} == A4 XPAPERSIZE=a4 X.elif ${PAPERSIZE} != a4 && ${PAPERSIZE} != letter XPAPERSIZE_INVALID=yes X.endif X XALL_TARGET=all help html X XMAN1= R.1 Rdconv.1 X Xpre-fetch: X.if defined(PAPERSIZE_INVALID) X @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" X @${ECHO} "Possible values are: A4 (default), and Letter." X @${FALSE} X.endif X Xtest: X @(cd ${WRKSRC}; make test-All) X Xpost-install: X ${SED} 's:PREFIX:${PREFIX}:;s:DEFAULTPAPER:${PAPERSIZE}:' ${FILESDIR}/R > ${PREFIX}/bin/R X X.include END-of-r-0.62.3/Makefile exit >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message