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Subject: [Bug 216619] biology/bowtie2: fails to build with clang 4.0
Date: Mon, 20 Feb 2017 03:57:01 +0000
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D216619

Jason Bacon <bacon4000@gmail.com> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
 Attachment #180156|                            |maintainer-approval+
              Flags|                            |

--- Comment #1 from Jason Bacon <bacon4000@gmail.com> ---
Created attachment 180156
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D180156&action=
=3Dedit
Unified diff

Try this patch and let me know if it resolves the error on your end.

I don't see a clang4 port so I'm guessing your using FreeBSD 12 and clang 4=
 is
the base compiler?

I confirmed the new patch with the upstream developer and upgraded to the
latest release while I was at it.

It passes poudriere and portlint.

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