Date: Thu, 28 Mar 2013 13:05:42 +0000 (UTC) From: Max Brazhnikov <makc@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r315466 - in head/science: . pyteomics Message-ID: <201303281305.r2SD5gQM046011@svn.freebsd.org>
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Author: makc Date: Thu Mar 28 13:05:42 2013 New Revision: 315466 URL: http://svnweb.freebsd.org/changeset/ports/315466 Log: Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics Added: head/science/pyteomics/ head/science/pyteomics/Makefile (contents, props changed) head/science/pyteomics/distinfo (contents, props changed) head/science/pyteomics/pkg-descr (contents, props changed) head/science/pyteomics/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Thu Mar 28 13:03:40 2013 (r315465) +++ head/science/Makefile Thu Mar 28 13:05:42 2013 (r315466) @@ -177,6 +177,7 @@ SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn + SUBDIR += pyteomics SUBDIR += qcl SUBDIR += qtresistors SUBDIR += ruby-dcl Added: head/science/pyteomics/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/pyteomics/Makefile Thu Mar 28 13:05:42 2013 (r315466) @@ -0,0 +1,19 @@ +# $FreeBSD$ + +PORTNAME= pyteomics +PORTVERSION= 2.1.3 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP/source/p/${PORTNAME}/ +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= makc@FreeBSD.org +COMMENT= Python modules for proteomics data analysis + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:${PORTSDIR}/devel/py-lxml \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:${PORTSDIR}/math/py-matplotlib \ + ${PYNUMPY} + +USE_PYTHON= 2.6+ +USE_PYDISTUTILS= yes + +.include <bsd.port.mk> Added: head/science/pyteomics/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/pyteomics/distinfo Thu Mar 28 13:05:42 2013 (r315466) @@ -0,0 +1,2 @@ +SHA256 (pyteomics-2.1.3.tar.gz) = 1986f5e7e090b7c8872293166219a50f60f475bd2802ad98c399160241f1fd52 +SIZE (pyteomics-2.1.3.tar.gz) = 69609 Added: head/science/pyteomics/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/pyteomics/pkg-descr Thu Mar 28 13:05:42 2013 (r315466) @@ -0,0 +1,16 @@ +Pyteomics is a collection of lightweight and handy tools for Python +that help to handle various sorts of proteomics data. Pyteomics +provides a growing set of modules to facilitate the most common +tasks in proteomics data analysis, such as: + + * calculation of basic physico-chemical properties of polypeptides: + . mass and isotopic distribution + . charge and pI + . chromatographic retention time + * access to common proteomics data: + . MS or LC-MS data + . FASTA databases + . search engines output + * easy manipulation of sequences of modified peptides and proteins + +WWW: https://pypi.python.org/pypi/pyteomics Added: head/science/pyteomics/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/pyteomics/pkg-plist Thu Mar 28 13:05:42 2013 (r315466) @@ -0,0 +1,39 @@ +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.py +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.py +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.py +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.py +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.py +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mass.py +%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.py +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.py +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.py +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/parser.py +%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.py +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.py +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyo +@dirrmtry %%PYTHON_SITELIBDIR%%/pyteomics +@dirrmtry %%PYTHON_SITELIBDIR%% +@dirrmtry %%PYTHON_LIBDIR%%
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