Date: Fri, 13 Jul 2018 07:02:17 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474558 - in head/biology: . exonerate Message-ID: <201807130702.w6D72Hs7090210@repo.freebsd.org>
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Author: yuri Date: Fri Jul 13 07:02:16 2018 New Revision: 474558 URL: https://svnweb.freebsd.org/changeset/ports/474558 Log: New port: biology/exonerate: Generic tool for sequence alignment PR: 229180 Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp> Added: head/biology/exonerate/ head/biology/exonerate/Makefile (contents, props changed) head/biology/exonerate/distinfo (contents, props changed) head/biology/exonerate/pkg-descr (contents, props changed) head/biology/exonerate/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Jul 13 07:02:16 2018 (r474557) +++ head/biology/Makefile Fri Jul 13 07:02:16 2018 (r474558) @@ -26,6 +26,7 @@ SUBDIR += ddocent SUBDIR += diamond SUBDIR += emboss + SUBDIR += exonerate SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastahack Added: head/biology/exonerate/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/exonerate/Makefile Fri Jul 13 07:02:16 2018 (r474558) @@ -0,0 +1,22 @@ +# Created by: Motomichi Matsuzaki <mzaki@niid.go.jp> +# $FreeBSD$ + +PORTNAME= exonerate +PORTVERSION= 2.4.0 +CATEGORIES= biology +MASTER_SITES= http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/ + +MAINTAINER= mzaki@niid.go.jp +COMMENT= Generic tool for sequence alignment + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +USES= gnome pkgconfig +GNU_CONFIGURE= yes +USE_GNOME= glib20 +TEST_TARGET= check + +MAKE_JOBS_UNSAFE= yes + +.include <bsd.port.mk> Added: head/biology/exonerate/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/exonerate/distinfo Fri Jul 13 07:02:16 2018 (r474558) @@ -0,0 +1,3 @@ +TIMESTAMP = 1529394154 +SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042 +SIZE (exonerate-2.4.0.tar.gz) = 520899 Added: head/biology/exonerate/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/exonerate/pkg-descr Fri Jul 13 07:02:16 2018 (r474558) @@ -0,0 +1,10 @@ +Exonerate is a tool for various types of pairwise sequence comparison. +It allows us to align sequences using many alignment models including +est2genome, protein2genome, and so on. + +Citation: + +Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics +for biological sequence comparison. BMC Bioinformatics 6:31. + +WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate Added: head/biology/exonerate/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/exonerate/pkg-plist Fri Jul 13 07:02:16 2018 (r474558) @@ -0,0 +1,31 @@ +bin/exonerate +bin/ipcress +bin/exonerate-server +bin/fastaclean +bin/fastaclip +bin/fastachecksum +bin/fastacomposition +bin/fastadiff +bin/fastaexplode +bin/fastafetch +bin/fastahardmask +bin/fastaindex +bin/fastalength +bin/fastanrdb +bin/fastaoverlap +bin/fastareformat +bin/fastaremove +bin/fastarevcomp +bin/fastasoftmask +bin/fastasort +bin/fastasplit +bin/fastasubseq +bin/fastatranslate +bin/fastavalidcds +bin/fasta2esd +bin/fastaannotatecdna +bin/esd2esi +man/man1/exonerate-server.1.gz +man/man1/fastautils.1.gz +man/man1/exonerate.1.gz +man/man1/ipcress.1.gz
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