From owner-svn-ports-head@freebsd.org Fri Sep 28 18:47:51 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 5B67B10B6EC9; Fri, 28 Sep 2018 18:47:51 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 0F0AA7DD98; Fri, 28 Sep 2018 18:47:51 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 09B0F18CDE; Fri, 28 Sep 2018 18:47:51 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w8SIloYg020070; Fri, 28 Sep 2018 18:47:50 GMT (envelope-from danilo@FreeBSD.org) Received: (from danilo@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w8SIloCT020066; Fri, 28 Sep 2018 18:47:50 GMT (envelope-from danilo@FreeBSD.org) Message-Id: <201809281847.w8SIloCT020066@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: danilo set sender to danilo@FreeBSD.org using -f From: Danilo Egea Gondolfo Date: Fri, 28 Sep 2018 18:47:50 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r480878 - in head/biology: iolib p5-Bio-SCF X-SVN-Group: ports-head X-SVN-Commit-Author: danilo X-SVN-Commit-Paths: in head/biology: iolib p5-Bio-SCF X-SVN-Commit-Revision: 480878 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 28 Sep 2018 18:47:51 -0000 Author: danilo Date: Fri Sep 28 18:47:49 2018 New Revision: 480878 URL: https://svnweb.freebsd.org/changeset/ports/480878 Log: - Update to 1-14-10 - Move USES to make portlint happy Modified: head/biology/iolib/Makefile head/biology/iolib/distinfo head/biology/iolib/pkg-plist head/biology/p5-Bio-SCF/Makefile Modified: head/biology/iolib/Makefile ============================================================================== --- head/biology/iolib/Makefile Fri Sep 28 18:47:25 2018 (r480877) +++ head/biology/iolib/Makefile Fri Sep 28 18:47:49 2018 (r480878) @@ -3,7 +3,7 @@ PORTNAME= io_lib DISTVERSIONPREFIX= ${PORTNAME}- -DISTVERSION= 1-14-9 +DISTVERSION= 1-14-10 CATEGORIES= biology MAINTAINER= danilo@FreeBSD.org @@ -17,10 +17,11 @@ BROKEN_powerpc64= fails to compile: bgzip.c: error: in LIB_DEPENDS= libcurl.so:ftp/curl +USES= autoreconf gmake libtool + USE_GITHUB= yes GH_ACCOUNT= jkbonfield -USES= autoreconf gmake libtool GNU_CONFIGURE= yes USE_LDCONFIG= yes INSTALL_TARGET= install-strip Modified: head/biology/iolib/distinfo ============================================================================== --- head/biology/iolib/distinfo Fri Sep 28 18:47:25 2018 (r480877) +++ head/biology/iolib/distinfo Fri Sep 28 18:47:49 2018 (r480878) @@ -1,3 +1,3 @@ -TIMESTAMP = 1488270338 -SHA256 (jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz) = 077044d525e9dd76f94ee83b0ab19cd655b08348cc81bbdaa84e39c622280a4a -SIZE (jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz) = 1396092 +TIMESTAMP = 1538157628 +SHA256 (jkbonfield-io_lib-io_lib-1-14-10_GH0.tar.gz) = 4bd576e52bb7e6be6c2efe42db2764b713c8b61b44a025ad0567dba052b6db1c +SIZE (jkbonfield-io_lib-io_lib-1-14-10_GH0.tar.gz) = 3391479 Modified: head/biology/iolib/pkg-plist ============================================================================== --- head/biology/iolib/pkg-plist Fri Sep 28 18:47:25 2018 (r480877) +++ head/biology/iolib/pkg-plist Fri Sep 28 18:47:49 2018 (r480878) @@ -87,8 +87,8 @@ include/io_lib/zfio.h include/io_lib/ztr.h lib/libstaden-read.a lib/libstaden-read.so -lib/libstaden-read.so.11 -lib/libstaden-read.so.11.1.0 +lib/libstaden-read.so.13 +lib/libstaden-read.so.13.0.0 man/man1/scramble.1.gz man/man1/srf2fasta.1.gz man/man1/srf2fastq.1.gz Modified: head/biology/p5-Bio-SCF/Makefile ============================================================================== --- head/biology/p5-Bio-SCF/Makefile Fri Sep 28 18:47:25 2018 (r480877) +++ head/biology/p5-Bio-SCF/Makefile Fri Sep 28 18:47:49 2018 (r480878) @@ -3,7 +3,7 @@ PORTNAME= Bio-SCF PORTVERSION= 1.03 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5-