From owner-svn-ports-all@freebsd.org Tue Nov 10 22:54:54 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 29B144665E5; Tue, 10 Nov 2020 22:54:54 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4CW38t0JXbz3Hrf; Tue, 10 Nov 2020 22:54:54 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id F192324E9; Tue, 10 Nov 2020 22:54:53 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 0AAMsrGq095043; Tue, 10 Nov 2020 22:54:53 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 0AAMsrtr095036; Tue, 10 Nov 2020 22:54:53 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202011102254.0AAMsrtr095036@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Tue, 10 Nov 2020 22:54:53 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r554859 - in head/science/tinker: . files X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/science/tinker: . files X-SVN-Commit-Revision: 554859 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 10 Nov 2020 22:54:54 -0000 Author: yuri Date: Tue Nov 10 22:54:52 2020 New Revision: 554859 URL: https://svnweb.freebsd.org/changeset/ports/554859 Log: science/tinker: Update 8.8.1 -> 8.8.3 Modified: head/science/tinker/Makefile head/science/tinker/distinfo head/science/tinker/files/patch-make_Makefile head/science/tinker/pkg-plist Modified: head/science/tinker/Makefile ============================================================================== --- head/science/tinker/Makefile Tue Nov 10 22:43:39 2020 (r554858) +++ head/science/tinker/Makefile Tue Nov 10 22:54:52 2020 (r554859) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= tinker -DISTVERSION= 8.8.1 +DISTVERSION= 8.8.3 CATEGORIES= science MASTER_SITES= https://dasher.wustl.edu/tinker/downloads/ Modified: head/science/tinker/distinfo ============================================================================== --- head/science/tinker/distinfo Tue Nov 10 22:43:39 2020 (r554858) +++ head/science/tinker/distinfo Tue Nov 10 22:54:52 2020 (r554859) @@ -1,3 +1,3 @@ -TIMESTAMP = 1597694919 -SHA256 (tinker-8.8.1.tar.gz) = 8477afb51a0dcbba421948645eb77df3d071de984440b2e2d14063f9477e6d2e -SIZE (tinker-8.8.1.tar.gz) = 69052620 +TIMESTAMP = 1605046844 +SHA256 (tinker-8.8.3.tar.gz) = 9f874ffc8d3b996e0b44ee1ee58759de0352e11767155a9dd80d63979e5957d4 +SIZE (tinker-8.8.3.tar.gz) = 69516061 Modified: head/science/tinker/files/patch-make_Makefile ============================================================================== --- head/science/tinker/files/patch-make_Makefile Tue Nov 10 22:43:39 2020 (r554858) +++ head/science/tinker/files/patch-make_Makefile Tue Nov 10 22:54:52 2020 (r554859) @@ -1,4 +1,4 @@ ---- make/Makefile.orig 2020-07-27 02:52:19 UTC +--- make/Makefile.orig 2020-11-09 22:09:06 UTC +++ make/Makefile @@ -87,9 +87,9 @@ APBS_LIBS = -lapbsmainroutines -lapbs -lmaloc -lapbsbl F77 = gfortran @@ -12,7 +12,7 @@ LIBS = LIBFLAGS = -crusv RANLIB = ranlib -c -@@ -813,132 +813,132 @@ listing: +@@ -817,134 +817,134 @@ listing: cat *.f *.c > tinker.txt rename_bin: @@ -22,6 +22,7 @@ - mv archive.x $(BINDIR)/archive - mv bar.x $(BINDIR)/bar - mv correlate.x $(BINDIR)/correlate +- mv critical.x $(BINDIR)/critical - mv crystal.x $(BINDIR)/crystal - mv diffuse.x $(BINDIR)/diffuse - mv distgeom.x $(BINDIR)/distgeom @@ -84,6 +85,7 @@ + ${BSD_INSTALL_PROGRAM} archive.x $(BINDIR)/archive + ${BSD_INSTALL_PROGRAM} bar.x $(BINDIR)/bar + ${BSD_INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate ++ ${BSD_INSTALL_PROGRAM} critical.x $(BINDIR)/critical + ${BSD_INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal + ${BSD_INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse + ${BSD_INSTALL_PROGRAM} distgeom.x $(BINDIR)/distgeom @@ -148,6 +150,7 @@ - mv archive.x $(BINDIR)/archive.exe - mv bar.x $(BINDIR)/bar.exe - mv correlate.x $(BINDIR)/correlate.exe +- mv critical.x $(BINDIR)/critical.exe - mv crystal.x $(BINDIR)/crystal.exe - mv diffuse.x $(BINDIR)/diffuse.exe - mv distgeom.x $(BINDIR)/distgeom.exe @@ -210,6 +213,7 @@ + ${BSD_INSTALL_PROGRAM} archive.x $(BINDIR)/archive.exe + ${BSD_INSTALL_PROGRAM} bar.x $(BINDIR)/bar.exe + ${BSD_INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate.exe ++ ${BSD_INSTALL_PROGRAM} critical.x $(BINDIR)/critical.exe + ${BSD_INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal.exe + ${BSD_INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse.exe + ${BSD_INSTALL_PROGRAM} distgeom.x $(BINDIR)/distgeom.exe Modified: head/science/tinker/pkg-plist ============================================================================== --- head/science/tinker/pkg-plist Tue Nov 10 22:43:39 2020 (r554858) +++ head/science/tinker/pkg-plist Tue Nov 10 22:54:52 2020 (r554859) @@ -4,6 +4,7 @@ bin/anneal bin/archive bin/bar bin/correlate +bin/critical bin/crystal bin/diffuse bin/distgeom @@ -92,6 +93,7 @@ bin/xyzpdb %%DATADIR%%/params/smoothaa.prm %%DATADIR%%/params/smoothua.prm %%DATADIR%%/params/tiny.prm +%%DATADIR%%/params/uwater.prm %%DATADIR%%/params/water03.prm %%DATADIR%%/params/water14.prm %%DATADIR%%/params/water19.prm @@ -156,6 +158,7 @@ bin/xyzpdb %%DATADIR%%/test/gpcr.blk %%DATADIR%%/test/gpcr.key %%DATADIR%%/test/gpcr.log +%%DATADIR%%/test/gpcr.old %%DATADIR%%/test/gpcr.run %%DATADIR%%/test/gpcr.xyz %%DATADIR%%/test/helix.1st