From owner-svn-ports-head@freebsd.org Fri Oct 19 02:03:41 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 92363F7D875; Fri, 19 Oct 2018 02:03:41 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 38B3E88E82; Fri, 19 Oct 2018 02:03:41 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 2D2C0552; Fri, 19 Oct 2018 02:03:41 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w9J23fcg077605; Fri, 19 Oct 2018 02:03:41 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w9J23e22077599; Fri, 19 Oct 2018 02:03:40 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201810190203.w9J23e22077599@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Fri, 19 Oct 2018 02:03:40 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r482398 - in head/biology: . py-gtfparse X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology: . py-gtfparse X-SVN-Commit-Revision: 482398 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 19 Oct 2018 02:03:41 -0000 Author: yuri Date: Fri Oct 19 02:03:40 2018 New Revision: 482398 URL: https://svnweb.freebsd.org/changeset/ports/482398 Log: New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) files Added: head/biology/py-gtfparse/ head/biology/py-gtfparse/Makefile (contents, props changed) head/biology/py-gtfparse/distinfo (contents, props changed) head/biology/py-gtfparse/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Oct 19 01:01:34 2018 (r482397) +++ head/biology/Makefile Fri Oct 19 02:03:40 2018 (r482398) @@ -104,6 +104,7 @@ SUBDIR += py-biopython SUBDIR += py-bx-python SUBDIR += py-cutadapt + SUBDIR += py-gtfparse SUBDIR += py-loompy SUBDIR += py-macs2 SUBDIR += py-orange3-bioinformatics Added: head/biology/py-gtfparse/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/Makefile Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,22 @@ +# $FreeBSD$ + +PORTNAME= gtfparse +DISTVERSION= 1.2.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Parsing tools for GTF (gene transfer format) files + +LICENSE= APACHE20 + +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=0.15:math/py-pandas@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include Added: head/biology/py-gtfparse/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/distinfo Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,3 @@ +TIMESTAMP = 1539913049 +SHA256 (gtfparse-1.2.0.tar.gz) = 2f27aa2b87eb43d613edabf27f9c11147dc595c8683b440ac1d88e9acdb85873 +SIZE (gtfparse-1.2.0.tar.gz) = 12601 Added: head/biology/py-gtfparse/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/pkg-descr Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,6 @@ +Tools to parse files in GTF (gene transfer format). + +GTF is a common format to exchange large portions of, or entire genotype +information. + +WWW: https://github.com/openvax/gtfparse