From owner-svn-ports-all@freebsd.org Thu Jan 23 10:44:42 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 8E7D2234EF8; Thu, 23 Jan 2020 10:44:42 +0000 (UTC) (envelope-from pkubaj@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 483Jn636dVz4Rg9; Thu, 23 Jan 2020 10:44:42 +0000 (UTC) (envelope-from pkubaj@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4C01DD62C; Thu, 23 Jan 2020 10:44:42 +0000 (UTC) (envelope-from pkubaj@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 00NAigXK069906; Thu, 23 Jan 2020 10:44:42 GMT (envelope-from pkubaj@FreeBSD.org) Received: (from pkubaj@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 00NAifY1069904; Thu, 23 Jan 2020 10:44:41 GMT (envelope-from pkubaj@FreeBSD.org) Message-Id: <202001231044.00NAifY1069904@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: pkubaj set sender to pkubaj@FreeBSD.org using -f From: Piotr Kubaj Date: Thu, 23 Jan 2020 10:44:41 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r523918 - in head/science/py-pymatgen: . files X-SVN-Group: ports-head X-SVN-Commit-Author: pkubaj X-SVN-Commit-Paths: in head/science/py-pymatgen: . files X-SVN-Commit-Revision: 523918 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 23 Jan 2020 10:44:42 -0000 Author: pkubaj Date: Thu Jan 23 10:44:41 2020 New Revision: 523918 URL: https://svnweb.freebsd.org/changeset/ports/523918 Log: science/py-pymatgen: fix build on GCC architectures C++11 compiler is necessary:cc1plus: error: unrecognized command line option "-std=c++11" -march=native is specified in CXXFLAGS and may break runtime on some x86: cc1plus: error: unrecognized command line option "-march=native" Approved by: portmgr (ports compliance) Added: head/science/py-pymatgen/files/ head/science/py-pymatgen/files/patch-setup.py (contents, props changed) Modified: head/science/py-pymatgen/Makefile Modified: head/science/py-pymatgen/Makefile ============================================================================== --- head/science/py-pymatgen/Makefile Thu Jan 23 10:10:52 2020 (r523917) +++ head/science/py-pymatgen/Makefile Thu Jan 23 10:44:41 2020 (r523918) @@ -29,7 +29,7 @@ RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR} # see https://github.com/materialsproject/pymatgen/issues/1386 -USES= python:3.5+ +USES= compiler:c++11-lang python:3.5+ USE_PYTHON= distutils concurrent autoplist .include Added: head/science/py-pymatgen/files/patch-setup.py ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-pymatgen/files/patch-setup.py Thu Jan 23 10:44:41 2020 (r523918) @@ -0,0 +1,18 @@ +--- setup.py.orig 2020-01-23 10:17:29 UTC ++++ setup.py +@@ -31,7 +31,7 @@ if sys.platform.startswith('win') and platform.machine + extra_link_args.append('-Wl,--allow-multiple-definition') + + cpp_extra_link_args = extra_link_args +-cpp_extra_compile_args = ["-Wno-cpp", "-Wno-unused-function", "-O2", "-march=native", '-std=c++11'] ++cpp_extra_compile_args = ["-Wno-cpp", "-Wno-unused-function", "-O2", '-std=c++11'] + if sys.platform.startswith('darwin'): + cpp_extra_compile_args.append("-stdlib=libc++") + cpp_extra_link_args = ["-O2", "-march=native", '-stdlib=libc++'] +@@ -189,4 +189,4 @@ setup( + 'get_environment = pymatgen.cli.get_environment:main', + ] + } +-) +\ No newline at end of file ++)