Date: Thu, 12 Jan 2017 23:23:19 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r431331 - head/biology/diamond Message-ID: <201701122323.v0CNNJmS024422@repo.freebsd.org>
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Author: jrm Date: Thu Jan 12 23:23:19 2017 New Revision: 431331 URL: https://svnweb.freebsd.org/changeset/ports/431331 Log: biology/diamond: Update to version 0.8.31. Upstream changelog: - Added compositional score adjustments (option --comp-based-stats (0,1)). This is a useful feature for filtering false positive hits and is enabled by default. - Removed --single-domain option and replaced by --max-hsps, to set the maximum number of Hsps per query/subject pair, to be consistent with BLAST. This option is set to 1 by default as getting more than 1 Hsp per subject seems to be confusing users. - Added option --no-self-hits to filter identical self-hits. Approved by: AMDmi3 (mentor) Differential Revision: https://reviews.freebsd.org/D9134 Modified: head/biology/diamond/Makefile head/biology/diamond/distinfo Modified: head/biology/diamond/Makefile ============================================================================== --- head/biology/diamond/Makefile Thu Jan 12 23:21:15 2017 (r431330) +++ head/biology/diamond/Makefile Thu Jan 12 23:23:19 2017 (r431331) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= diamond -PORTVERSION= 0.8.30 +PORTVERSION= 0.8.31 DISTVERSIONPREFIX=v CATEGORIES= biology Modified: head/biology/diamond/distinfo ============================================================================== --- head/biology/diamond/distinfo Thu Jan 12 23:21:15 2017 (r431330) +++ head/biology/diamond/distinfo Thu Jan 12 23:23:19 2017 (r431331) @@ -1,3 +1,3 @@ -TIMESTAMP = 1483113104 -SHA256 (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = ee138e4241c2712d6ce967785474312c52a45c6b56715b00e2abf759605e1fbb -SIZE (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = 329097 +TIMESTAMP = 1484137862 +SHA256 (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = b89fec7665346d80dd3e8e0c7fb599117cd0f6c9831cf568dd08bf9b894b075a +SIZE (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = 335317
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