Date: Thu, 14 Feb 2019 19:22:47 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120powerpc64-quarterly][science/sparta] Failed for sparta-dsmc-2018.10.29_1 in build Message-ID: <201902141922.x1EJMlms093019@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2019Q1/science/sparta/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/492798/logs/sparta-dsmc-2018.10.29_1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=492798 Log: =>> Building science/sparta build started at Thu Feb 14 19:22:10 UTC 2019 port directory: /usr/ports/science/sparta package name: sparta-dsmc-2018.10.29_1 building for: FreeBSD 120powerpc64-quarterly-job-02 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 powerpc maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q1/science/sparta/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8-1-g2a843cca Host OSVERSION: 1300012 Jail OSVERSION: 1200086 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-1-g2a843cca MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=vt100 PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for sparta-dsmc-2018.10.29_1: ====> Parallelization: you have to select exactly one of them SERIAL=off: Serial: no parallelization MPI=on: MPI (Message Passing Interface) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/sparta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/sparta/work HOME=/wrkdirs/usr/ports/science/sparta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/sparta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/sparta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/sparta/work HOME=/wrkdirs/usr/ports/science/sparta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/sparta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/mpi/openmpi/lib/libmpi.so -Wl,-rpath=/usr/local/mpi/openmpi/lib " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_IN STALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sparta" EXAMPLESDIR="share/examples/sparta" DATADIR="share/sparta" WWWDIR="www/sparta" ETCDIR="etc/sparta" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sparta DOCSDIR=/usr/local/share/doc/sparta EXAMPLESDIR=/usr/local/share/examples/sparta WWWDIR=/usr/local/www/sparta ETCDIR=/usr/local/etc/sparta --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p3 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> sparta-dsmc-2018.10.29_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120powerpc64-quarterly-job-02] Installing pkg-1.10.5_5... [120powerpc64-quarterly-job-02] Extracting pkg-1.10.5_5: .......... done ===> sparta-dsmc-2018.10.29_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of sparta-dsmc-2018.10.29_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user => sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/sparta/sparta/tar.gz/29Oct2018?dummy=/sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz fetch: https://codeload.github.com/sparta/sparta/tar.gz/29Oct2018?dummy=/sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz: size unknown fetch: https://codeload.github.com/sparta/sparta/tar.gz/29Oct2018?dummy=/sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz: size of remote file is not known sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz 19 MB 8236 kBps 03s ===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building => SHA256 Checksum OK for sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building ===> Extracting for sparta-dsmc-2018.10.29_1 => SHA256 Checksum OK for sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for sparta-dsmc-2018.10.29_1 ===> Applying FreeBSD patches for sparta-dsmc-2018.10.29_1 =========================================================================== =======================<phase: build-depends >============================ ===> sparta-dsmc-2018.10.29_1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-4.4.23_1.txz [120powerpc64-quarterly-job-02] Installing bash-4.4.23_1... [120powerpc64-quarterly-job-02] `-- Installing gettext-runtime-0.19.8.1_2... [120powerpc64-quarterly-job-02] | `-- Installing indexinfo-0.3.1... [120powerpc64-quarterly-job-02] | `-- Extracting indexinfo-0.3.1: .... done [120powerpc64-quarterly-job-02] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [120powerpc64-quarterly-job-02] Extracting bash-4.4.23_1: .......... done ===> sparta-dsmc-2018.10.29_1 depends on executable: bash - found ===> Returning to build of sparta-dsmc-2018.10.29_1 ===> sparta-dsmc-2018.10.29_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [120powerpc64-quarterly-job-02] Installing gmake-4.2.1_3... [120powerpc64-quarterly-job-02] Extracting gmake-4.2.1_3: .......... done ===> sparta-dsmc-2018.10.29_1 depends on executable: gmake - found ===> Returning to build of sparta-dsmc-2018.10.29_1 =========================================================================== =======================<phase: lib-depends >============================ ===> sparta-dsmc-2018.10.29_1 depends on shared library: libmpi.so - not found ===> Installing existing package /packages/All/openmpi-1.10.7_4.txz [120powerpc64-quarterly-job-02] Installing openmpi-1.10.7_4... [120powerpc64-quarterly-job-02] `-- Installing gcc8-8.2.0_4... [120powerpc64-quarterly-job-02] | `-- Installing binutils-2.30_7,1... [120powerpc64-quarterly-job-02] | `-- Extracting binutils-2.30_7,1: .......... done [120powerpc64-quarterly-job-02] | `-- Installing gcc5-5.5.0_6... [120powerpc64-quarterly-job-02] | | `-- Installing gmp-6.1.2_1... [120powerpc64-quarterly-job-02] | | `-- Extracting gmp-6.1.2_1: .......... done [120powerpc64-quarterly-job-02] | | `-- Installing mpc-1.1.0_2... [120powerpc64-quarterly-job-02] | | `-- Installing mpfr-4.0.1_2... [120powerpc64-quarterly-job-02] | | `-- Extracting mpfr-4.0.1_2: .......... done [120powerpc64-quarterly-job-02] | | `-- Extracting mpc-1.1.0_2: ......... done [120powerpc64-quarterly-job-02] | `-- Extracting gcc5-5.5.0_6: .......... done [120powerpc64-quarterly-job-02] `-- Extracting gcc8-8.2.0_4: .......... done [120powerpc64-quarterly-job-02] `-- Installing hwloc-1.11.11... [120powerpc64-quarterly-job-02] | `-- Installing libpciaccess-0.13.5... [120powerpc64-quarterly-job-02] | | `-- Installing pciids-20181113... [120powerpc64-quarterly-job-02] | | `-- Extracting pciids-20181113: ..... done [120powerpc64-quarterly-job-02] | `-- Extracting libpciaccess-0.13.5: ......... done [120powerpc64-quarterly-job-02] | `-- Installing libxml2-2.9.7... [120powerpc64-quarterly-job-02] | `-- Extracting libxml2-2.9.7: .......... done [120powerpc64-quarterly-job-02] `-- Extracting hwloc-1.11.11: .......... done [120powerpc64-quarterly-job-02] `-- Installing libevent-2.1.8_2... [120powerpc64-quarterly-job-02] `-- Extracting libevent-2.1.8_2: .......... done [120powerpc64-quarterly-job-02] `-- Installing libltdl-2.4.6... [120powerpc64-quarterly-job-02] `-- Extracting libltdl-2.4.6: .......... done [120powerpc64-quarterly-job-02] `-- Installing slurm-wlm-17.02.11_1... [120powerpc64-quarterly-job-02] | `-- Installing hdf-szip-2.1_2... [120powerpc64-quarterly-job-02] | `-- Extracting hdf-szip-2.1_2: .......... done [120powerpc64-quarterly-job-02] | `-- Installing hdf5-1.10.2_1... [120powerpc64-quarterly-job-02] | `-- Extracting hdf5-1.10.2_1: .......... done [120powerpc64-quarterly-job-02] | `-- Installing json-c-0.13.1... [120powerpc64-quarterly-job-02] | `-- Extracting json-c-0.13.1: .......... done [120powerpc64-quarterly-job-02] | `-- Installing liblz4-1.8.3,1... [120powerpc64-quarterly-job-02] | `-- Extracting liblz4-1.8.3,1: .......... done [120powerpc64-quarterly-job-02] | `-- Installing libsysinfo-0.0.3_2... [120powerpc64-quarterly-job-02] | `-- Extracting libsysinfo-0.0.3_2: ......... done [120powerpc64-quarterly-job-02] | `-- Installing munge-0.5.13_1... [120powerpc64-quarterly-job-02] | | `-- Installing perl5-5.28.1... [120powerpc64-quarterly-job-02] | | `-- Extracting perl5-5.28.1: .......... done [120powerpc64-quarterly-job-02] | `-- Extracting munge-0.5.13_1: ......... done [120powerpc64-quarterly-job-02] | `-- Installing readline-7.0.5... [120powerpc64-quarterly-job-02] | `-- Extracting readline-7.0.5: .......... done ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. [120powerpc64-quarterly-job-02] `-- Extracting slurm-wlm-17.02.11_1: .......... done [120powerpc64-quarterly-job-02] Extracting openmpi-1.10.7_4: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from gcc8-8.2.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from perl5-5.28.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> sparta-dsmc-2018.10.29_1 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so) ===> Returning to build of sparta-dsmc-2018.10.29_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for sparta-dsmc-2018.10.29_1 =========================================================================== =======================<phase: build >============================ ===> Building for sparta-dsmc-2018.10.29_1 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src/Obj_mpi' c++ -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include -DSPARTA_GZIP -M ../fix_ave_time.cpp > fix_ave_time.d c++ -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include -DSPARTA_GZIP -M ../compute_thermal_grid.cpp > compute_thermal_grid.d In file included from ../compute_thermal_grid.cpp:21: ./grid.h:24:25: error: unordered_map: No such file or directory Makefile:105: compute_thermal_grid.d: No such file or directory gmake[2]: *** [Makefile:100: compute_thermal_grid.d] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src/Obj_mpi' gmake[1]: *** [Makefile:102: mpi] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src' *** Error code 1 Stop. make: stopped in /usr/ports/science/sparta
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