From owner-freebsd-ports-bugs@freebsd.org Mon Feb 5 13:58:12 2018 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id D3FCDEF26D8 for ; Mon, 5 Feb 2018 13:58:11 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.ysv.freebsd.org (mxrelay.ysv.freebsd.org [IPv6:2001:1900:2254:206a::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.ysv.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 5425F74652 for ; Mon, 5 Feb 2018 13:58:11 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.ysv.freebsd.org (Postfix) with ESMTPS id 6D403164E for ; Mon, 5 Feb 2018 13:58:10 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id w15DwAxk065685 for ; Mon, 5 Feb 2018 13:58:10 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id w15DwAfW065684 for freebsd-ports-bugs@FreeBSD.org; Mon, 5 Feb 2018 13:58:10 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 225682] [maintainer-update] biology/seqan and biology/seqan-apps Date: Mon, 05 Feb 2018 13:58:10 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: h2+fbsdports@fsfe.org X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: freebsd-ports-bugs@FreeBSD.org X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.25 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 05 Feb 2018 13:58:12 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D225682 Bug ID: 225682 Summary: [maintainer-update] biology/seqan and biology/seqan-apps Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: h2+fbsdports@fsfe.org Created attachment 190337 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D190337&action= =3Dedit update for biology/seqan * update both ports to 2.4.0 * add OPTIMIZED_CFLAGS option to biology/seqan-apps * move a section of the biology/seqan-apps/Makefile around to satisfy port= lint * remove BROKEN_* from biology/seqan-apps/Makefile because upstream now cla= ims support for these architectures biology/seqan: root@celegans /usr/ports/biology/seqan # portlint looks fine. root@celegans /usr/ports/biology/seqan # make check-plist =3D=3D=3D=3D> Checking for pkg-plist issues (check-plist) =3D=3D=3D> Parsing plist =3D=3D=3D> Checking for items in STAGEDIR missing from pkg-plist =3D=3D=3D> Checking for items in pkg-plist which are not in STAGEDIR =3D=3D=3D> No pkg-plist issues found (check-plist) root@celegans /usr/ports/biology/seqan # make stage-qa =3D=3D=3D=3D> Running Q/A tests (stage-qa) /!\ To run stage-qa automatically add DEVELOPER=3Dyes to your environment /= !\ biology/seqan-apps: root@celegans /usr/ports/biology/seqan-apps # portlint looks fine. root@celegans /usr/ports/biology/seqan-apps # make check-plist =3D=3D=3D=3D> Checking for pkg-plist issues (check-plist) =3D=3D=3D> Parsing plist =3D=3D=3D> Checking for items in STAGEDIR missing from pkg-plist =3D=3D=3D> Checking for items in pkg-plist which are not in STAGEDIR =3D=3D=3D> No pkg-plist issues found (check-plist) root@celegans /usr/ports/biology/seqan-apps # make stage-qa =3D=3D=3D=3D> Running Q/A tests (stage-qa) /!\ To run stage-qa automatically add DEVELOPER=3Dyes to your environment /= !\ root@celegans /usr/ports/biology/seqan-apps # --=20 You are receiving this mail because: You are the assignee for the bug.=