From owner-freebsd-ports Tue Feb 23 9:30: 5 1999 Delivered-To: freebsd-ports@freebsd.org Received: from freefall.freebsd.org (freefall.FreeBSD.ORG [204.216.27.21]) by hub.freebsd.org (Postfix) with ESMTP id F10971156F for ; Tue, 23 Feb 1999 09:30:01 -0800 (PST) (envelope-from gnats@FreeBSD.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.9.2/8.9.2) id JAA27027; Tue, 23 Feb 1999 09:30:01 -0800 (PST) (envelope-from gnats@FreeBSD.org) Received: from area51.fremont.ca.us (d60-054.leach.ucdavis.edu [169.237.60.54]) by hub.freebsd.org (Postfix) with ESMTP id CEA2511616 for ; Tue, 23 Feb 1999 09:26:59 -0800 (PST) (envelope-from mharo@area51.fremont.ca.us) Received: (from mharo@localhost) by area51.fremont.ca.us (8.9.2/8.9.2) id JAA46476; Tue, 23 Feb 1999 09:27:26 -0800 (PST) (envelope-from mharo) Message-Id: <199902231727.JAA46476@area51.fremont.ca.us> Date: Tue, 23 Feb 1999 09:27:26 -0800 (PST) From: mharo@area51.fremont.ca.us Reply-To: mharo@area51.fremont.ca.us To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.2 Subject: ports/10228: Update: biology/hmmer Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk X-Loop: FreeBSD.org >Number: 10228 >Category: ports >Synopsis: Update: biology/hmmer >Confidential: no >Severity: non-critical >Priority: medium >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Feb 23 09:30:01 PST 1999 >Closed-Date: >Last-Modified: >Originator: Michael Haro >Release: FreeBSD 3.1-STABLE i386 >Organization: >Environment: >Description: hmmer was out of date and couldn't be fetched. >How-To-Repeat: >Fix: Index: Makefile =================================================================== RCS file: /host/trang.nuxi.com/FBSD/CVS-repository/ports/biology/hmmer/Makefile,v retrieving revision 1.3 diff -u -r1.3 Makefile --- Makefile 1999/01/02 00:12:17 1.3 +++ Makefile 1999/02/23 17:22:29 @@ -6,24 +6,22 @@ # $Id: Makefile,v 1.3 1999/01/02 00:12:17 asami Exp $ # -DISTNAME= hmmer-2.0 +DISTNAME= hmmer-2.1.1 CATEGORIES= biology -MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/oldversions/2.0/ +MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/ EXTRACT_SUFX= .tar.Z MAINTAINER= barnhart@genetics.wustl.edu -USE_PERL5= yes -MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 hmmer.1 hmmpfam.1 hmmsearch.1 +GNU_CONFIGURE= yes -WRKSRC= ${WRKDIR}/build/${DISTNAME} +USE_PERL5= yes +MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \ + hmmer.1 hmmpfam.1 hmmsearch.1 hmmfetch.1 hmmindex.1 alistat.1 \ + getseq.1 seqstat.1 sreformat.1 post-build: @ strip ${WRKSRC}/binaries/* - @ make test - -test: - @(cd ${WRKSRC}; make test) post-install: .if !defined(NOPORTDOCS) Index: files/md5 =================================================================== RCS file: /host/trang.nuxi.com/FBSD/CVS-repository/ports/biology/hmmer/files/md5,v retrieving revision 1.1.1.1 diff -u -r1.1.1.1 md5 --- md5 1998/07/12 23:30:03 1.1.1.1 +++ md5 1999/02/23 09:14:52 @@ -1 +1 @@ -MD5 (hmmer-2.0.tar.Z) = 7e993a3883046840f0672ea004bc268b +MD5 (hmmer-2.1.1.tar.Z) = 0f98910a3507b4d52fbe82adc6fa89b5 cvs diff: patches/patch-aa was removed, no comparison available cvs diff: patches/patch-ab was removed, no comparison available Index: pkg/PLIST =================================================================== RCS file: /host/trang.nuxi.com/FBSD/CVS-repository/ports/biology/hmmer/pkg/PLIST,v retrieving revision 1.3 diff -u -r1.3 PLIST --- PLIST 1998/09/27 01:35:32 1.3 +++ PLIST 1999/02/23 09:32:19 @@ -1,3 +1,9 @@ +bin/hmmfetch +bin/hmmindex +bin/alistat +bin/getseq +bin/seqstat +bin/sreformat bin/hmmalign bin/hmmbuild bin/hmmcalibrate >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message