Date: Sun, 17 Feb 2019 01:16:36 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 112mips-quarterly][biology/trimadap] Failed for trimadap-0.1.3 in build Message-ID: <201902170116.x1H1Gamt086375@beefy14.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: linimon@FreeBSD.org Ident: $FreeBSD: branches/2019Q1/biology/trimadap/Makefile 473009 2018-06-21 23:52:37Z linimon $ Log URL: http://beefy14.nyi.freebsd.org/data/112mips-quarterly/493029/logs/trimadap-0.1.3.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=112mips-quarterly&build=493029 Log: =>> Building biology/trimadap build started at Sun Feb 17 01:16:24 UTC 2019 port directory: /usr/ports/biology/trimadap package name: trimadap-0.1.3 building for: FreeBSD 112mips-quarterly-job-10 11.2-RELEASE-p9 FreeBSD 11.2-RELEASE-p9 1102000 mips maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q1/biology/trimadap/Makefile 473009 2018-06-21 23:52:37Z linimon $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1102000 Job Id: 10 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh OLDPWD=/usr/local/poudriere/data/.m/112mips-quarterly/ref/.p SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=112mips-quarterly P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/112mips-quarterly/ref/.p/pool SAVED_TERM= PACKAGE_BUILDING=yes POUDRIERE_BUILD_TYPE=bulk MASTERMNT=/usr/local/poudriere/data/.m/112mips-quarterly/ref POUDRIERE_VERSION=3.2.8-3-g02cc9753 LIBEXECPREFIX=/usr/local/libexec/poudriere USER=root QEMU_EMULATING=1 LOCALBASE=/usr/local PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin HOME=/root STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.2-RELEASE-p9 UNAME_v=FreeBSD 11.2-RELEASE-p9 1102000 OSVERSION=1102000 ABI_FILE=/usr/lib/crt1.o UNAME_m=mips UNAME_p=mips SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimadap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimadap/work HOME=/wrkdirs/usr/ports/biology/trimadap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/trimadap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimadap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimadap/work HOME=/wrkdirs/usr/ports/biology/trimadap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/trimadap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/trimadap" EXAMPLESDIR="share/examples/trimadap" DATADIR="share/trimadap" WWWDIR="www/trimadap" ETCDIR="etc/trimadap" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/trimadap DOCSDIR=/usr/local/share/doc/trimadap EXAMPLESDIR=/usr/local/share/examples/trimadap WWWDIR=/usr/local/www/trimadap ETCDIR=/usr/local/etc/trimadap --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips-undermydesk-freebsd Configured with: FreeBSD/mips system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" "-melf32btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_9d218390_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_9d218390_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_9d218390_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_9d218390=none ARCH=mips OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p9 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> trimadap-0.1.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [112mips-quarterly-job-10] Installing pkg-1.10.5_5... [112mips-quarterly-job-10] Extracting pkg-1.10.5_5: .......... done ===> trimadap-0.1.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of trimadap-0.1.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by trimadap-0.1.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by trimadap-0.1.3 for building => SHA256 Checksum OK for lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by trimadap-0.1.3 for building ===> Extracting for trimadap-0.1.3 => SHA256 Checksum OK for lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for trimadap-0.1.3 ===> Applying FreeBSD patches for trimadap-0.1.3 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for trimadap-0.1.3 =========================================================================== =======================<phase: build >============================ ===> Building for trimadap-0.1.3 /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -pthread ksw.c kthread.c trimadap-mt.c -o trimadap-mt -lz -lm ksw.c:29:23: error: emmintrin.h: No such file or directory ksw.c:45: error: expected specifier-qualifier-list before '__m128i' ksw.c: In function 'ksw_qinit': ksw.c:68: error: 'kswq_t' has no member named 'qp' ksw.c:68: error: '__m128i' undeclared (first use in this function) ksw.c:68: error: (Each undeclared identifier is reported only once ksw.c:68: error: for each function it appears in.) ksw.c:68: error: expected expression before ')' token ksw.c:69: error: 'kswq_t' has no member named 'H0' ksw.c:69: error: 'kswq_t' has no member named 'qp' ksw.c:70: error: 'kswq_t' has no member named 'H1' ksw.c:70: error: 'kswq_t' has no member named 'H0' ksw.c:71: error: 'kswq_t' has no member named 'E' ksw.c:71: error: 'kswq_t' has no member named 'H1' ksw.c:72: error: 'kswq_t' has no member named 'Hmax' ksw.c:72: error: 'kswq_t' has no member named 'E' ksw.c:86: error: 'kswq_t' has no member named 'qp' ksw.c:95: error: 'kswq_t' has no member named 'qp' ksw.c: In function 'ksw_u8': ksw.c:111: error: '__m128i' undeclared (first use in this function) ksw.c:111: error: expected ';' before 'zero' ksw.c:127: error: 'zero' undeclared (first use in this function) ksw.c:128: error: 'gapoe' undeclared (first use in this function) ksw.c:129: error: 'gape' undeclared (first use in this function) ksw.c:130: error: 'shift' undeclared (first use in this function) ksw.c:131: error: 'H0' undeclared (first use in this function) ksw.c:131: error: 'kswq_t' has no member named 'H0' ksw.c:131: error: 'H1' undeclared (first use in this function) ksw.c:131: error: 'kswq_t' has no member named 'H1' ksw.c:131: error: 'E' undeclared (first use in this function) ksw.c:131: error: 'kswq_t' has no member named 'E' ksw.c:131: error: 'Hmax' undeclared (first use in this function) ksw.c:131: error: 'kswq_t' has no member named 'Hmax' ksw.c:141: error: expected ';' before 'e' ksw.c:142: error: 'h' undeclared (first use in this function) ksw.c:151: error: 'S' undeclared (first use in this function) ksw.c:153: error: 'e' undeclared (first use in this function) ksw.c:155: error: 'f' undeclared (first use in this function) ksw.c:156: error: 'max' undeclared (first use in this function) ksw.c: In function 'ksw_i16': ksw.c:228: error: '__m128i' undeclared (first use in this function) ksw.c:228: error: expected ';' before 'zero' ksw.c:243: error: 'zero' undeclared (first use in this function) ksw.c:244: error: 'gapoe' undeclared (first use in this function) ksw.c:245: error: 'gape' undeclared (first use in this function) ksw.c:246: error: 'H0' undeclared (first use in this function) ksw.c:246: error: 'kswq_t' has no member named 'H0' ksw.c:246: error: 'H1' undeclared (first use in this function) ksw.c:246: error: 'kswq_t' has no member named 'H1' ksw.c:246: error: 'E' undeclared (first use in this function) ksw.c:246: error: 'kswq_t' has no member named 'E' ksw.c:246: error: 'Hmax' undeclared (first use in this function) ksw.c:246: error: 'kswq_t' has no member named 'Hmax' ksw.c:256: error: expected ';' before 'e' ksw.c:257: error: 'h' undeclared (first use in this function) ksw.c:260: error: 'S' undeclared (first use in this function) ksw.c:261: error: 'e' undeclared (first use in this function) ksw.c:263: error: 'f' undeclared (first use in this function) ksw.c:264: error: 'max' undeclared (first use in this function) *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/trimadap/work/trimadap-0.1-3-gddfef21 *** Error code 1 Stop. make: stopped in /usr/ports/biology/trimadap
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