From owner-svn-ports-head@FreeBSD.ORG Thu Apr 2 15:41:32 2015 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id B1D657CF; Thu, 2 Apr 2015 15:41:32 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 82C1A74B; Thu, 2 Apr 2015 15:41:32 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id t32FfWAJ035953; Thu, 2 Apr 2015 15:41:32 GMT (envelope-from amdmi3@FreeBSD.org) Received: (from amdmi3@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id t32FfWOG035952; Thu, 2 Apr 2015 15:41:32 GMT (envelope-from amdmi3@FreeBSD.org) Message-Id: <201504021541.t32FfWOG035952@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: amdmi3 set sender to amdmi3@FreeBSD.org using -f From: Dmitry Marakasov Date: Thu, 2 Apr 2015 15:41:32 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r383013 - head/biology/hmmer X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.18-1 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 02 Apr 2015 15:41:32 -0000 Author: amdmi3 Date: Thu Apr 2 15:41:31 2015 New Revision: 383013 URL: https://svnweb.freebsd.org/changeset/ports/383013 Log: - Remove deprecated option - Tweak compiler flags - Add LICENSE - Pass maintainership to submitter PR: 199066 Submitted by: jwbacon@tds.net Modified: head/biology/hmmer/Makefile Modified: head/biology/hmmer/Makefile ============================================================================== --- head/biology/hmmer/Makefile Thu Apr 2 15:35:27 2015 (r383012) +++ head/biology/hmmer/Makefile Thu Apr 2 15:41:31 2015 (r383013) @@ -3,37 +3,44 @@ PORTNAME= hmmer PORTVERSION= 3.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \ http://selab.janelia.org/software/hmmer3/3.0/ -MAINTAINER= ports@FreeBSD.org +MAINTAINER= jwbacon@tds.net COMMENT= Profile hidden Markov models for biological sequence analysis +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + GNU_CONFIGURE= yes USES= perl5 -CONFIGURE_ARGS+=--enable-threads --enable-lfs +CONFIGURE_ARGS+=--enable-threads DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \ HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \ Pkinase.hmm fn3.out globins4.out minifam minifam.h3m -OPTIONS_DEFINE= PVM DOCS EXAMPLES -PVM_DESC= PVM support +OPTIONS_DEFINE= DOCS EXAMPLES + +.include -PVM_CONFIGURE_ENV= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD" -PVM_CONFIGURE_WITH= pvm -PVM_BUILD_DEPENDS= pvm:${PORTSDIR}/net/pvm +# HMMER is useless without SSE and any PC in use today should support it +# Should probably also do enable-vmx on Power processors to enable +# Altivec/VMX, but I don't have a machine to test this. +.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386" +CONFIGURE_ARGS+=--enable-sse +.endif post-install: + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/* (cd ${WRKSRC}/documentation/man; for i in *.man; do \ ${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \ done) - @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR} - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}