From nobody Mon Oct 28 12:43:56 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XcY3d01QTz5bK0w; Mon, 28 Oct 2024 12:43:57 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XcY3c5TXGz4Vqx; Mon, 28 Oct 2024 12:43:56 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1730119436; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Wl3gVzXBxD+C3Npwi1me8WZzz9FP806aEGXfbXBMFug=; b=jNCYWUMJvFUOXrII25M2splS+EASoXNKtD+1ykT0hwg94cXCbv81Solik/wHzYulPwZ72y gYJAxtCqtcaiB6ldZe0u+LntYccUNa31HUkq468WMSOgiivQV9Xi8gzkr+FtM45PqnpD8R I9dsS5gW0JxuV/e9wXIcWNZsvRl3YqrpTcGmmGzMIJhVUVlTOlejX3mf2qBnS2qFUtJxAe YqqkUJqF5hzGsxlg/2C0q7GGJsw33nSMz5KrPmW3F7S69YFftZ5cXmf/LlZ1kSCn10BOd5 6AJjZQK7zAPiH5CUjmbko+pvVDtOWCkrctn2AAFT201JTeYjQgbF84chCQUlhg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1730119436; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Wl3gVzXBxD+C3Npwi1me8WZzz9FP806aEGXfbXBMFug=; b=stoG0o4ZHYCpJrwDdWiXijt7xzDV0hBEjOrCNe68nWswT7MIxwxJeE6z6I+Q/QXjx5W243 w6RwIWy3yx4mmM0rHu1hHILBzC3igy0bWbCuzjLLjLujEglAkplf1kC6yblaRLJSPsyyc+ Oua63f6U1DWy29oNOTBCFfh6ut34bC069J8qf/z6s1G6t+GvtsSqcNbWOTZxhxBGM+JPJi evU3bxcR7f03cTybbgXzlL4hR+6ltY+5J7bYkW+YHpleycvgXSgk6Dv/vV5WHx5BCAu8eN SW65R5XO7qNVXQHJwq5R0Ry+5OaenjptPzDeRwdTgDw0bskCgwSSoWGCNkqhAA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1730119436; a=rsa-sha256; cv=none; b=bjFNgZAP7FVoL8fDwDSxZeBjgqUL9Qre0yAOMnNqAKKGR7E9U3o+ZjjYmZsiMRCRENcbVM GlMl2XKUKCV/8qFBfA6YvRWFd4haQ5zKdIUSM2lEpw16ib/WHF1nUlOBk9eeWKSPNh9ASX iaZGb6cPmm2DgBp28rw4k+luDit1+cw1zW9tMzXy/88sOtN/5n+w5LawL6kaBNxdIoSckN KxCsbaXRK8KtUvLlskhprk/l74s69q5uBPc2pflINa7Qu55ot3J4SPL+XK0tLVsoVTKA6E y2mq+S2+V0EnoeRSI3gZRZfx99J6X3DL8EC0uXWgw25BZFYTVb85gbkmXuB6IQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4XcY3c55BHzfnR; Mon, 28 Oct 2024 12:43:56 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 49SChu8Q073283; Mon, 28 Oct 2024 12:43:56 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 49SChuef073280; Mon, 28 Oct 2024 12:43:56 GMT (envelope-from git) Date: Mon, 28 Oct 2024 12:43:56 GMT Message-Id: <202410281243.49SChuef073280@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Robert Clausecker Subject: git: 8647447c0da9 - main - biology/hmmer: update to 3.4 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: fuz X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8647447c0da92af2ceac8c4140280e64ce8f284c Auto-Submitted: auto-generated The branch main has been updated by fuz: URL: https://cgit.FreeBSD.org/ports/commit/?id=8647447c0da92af2ceac8c4140280e64ce8f284c commit 8647447c0da92af2ceac8c4140280e64ce8f284c Author: Robert Clausecker AuthorDate: 2024-10-15 15:05:24 +0000 Commit: Robert Clausecker CommitDate: 2024-10-28 12:41:48 +0000 biology/hmmer: update to 3.4 Now builds and runs on armv7/aarch64! Changelog: http://cryptogenomicon.org/hmmer-3-4-release.html See also file RELEASE-3.4.md in distfile for an extended change log. Approved by: mzaki@e-mail.ne.jp (maintainer timeout, two weeks) PR: 282111 --- biology/hmmer/Makefile | 7 +++---- biology/hmmer/distinfo | 6 +++--- biology/hmmer/pkg-plist | 1 - 3 files changed, 6 insertions(+), 8 deletions(-) diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index f5097d816ada..8ecfa09c77f5 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -1,6 +1,5 @@ PORTNAME= hmmer -PORTVERSION= 3.3.2 -PORTREVISION= 1 +DISTVERSION= 3.4 CATEGORIES= biology MASTER_SITES= http://eddylab.org/software/hmmer/ @@ -11,8 +10,8 @@ WWW= http://hmmer.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64 -ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions +ONLY_FOR_ARCHS= aarch64 amd64 armv7 i386 powerpc powerpc64 +ONLY_FOR_ARCHS_REASON= requires NEON, SSE2 or AltiVec instructions USES= compiler:c11 gmake perl5 python:test shebangfix USE_PERL5= test diff --git a/biology/hmmer/distinfo b/biology/hmmer/distinfo index edb75ddf6465..1c6cf4c9d3c9 100644 --- a/biology/hmmer/distinfo +++ b/biology/hmmer/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1665491511 -SHA256 (hmmer-3.3.2.tar.gz) = 92fee9b5efe37a5276352d3502775e7c46e9f7a0ee45a331eacb2a0cac713c69 -SIZE (hmmer-3.3.2.tar.gz) = 18213049 +TIMESTAMP = 1729004147 +SHA256 (hmmer-3.4.tar.gz) = ca70d94fd0cf271bd7063423aabb116d42de533117343a9b27a65c17ff06fbf3 +SIZE (hmmer-3.4.tar.gz) = 19669667 diff --git a/biology/hmmer/pkg-plist b/biology/hmmer/pkg-plist index 854e831b8df2..328699ae70d5 100644 --- a/biology/hmmer/pkg-plist +++ b/biology/hmmer/pkg-plist @@ -20,7 +20,6 @@ bin/phmmer share/man/man1/alimask.1.gz share/man/man1/hmmalign.1.gz share/man/man1/hmmbuild.1.gz -share/man/man1/hmmc2.1.gz share/man/man1/hmmconvert.1.gz share/man/man1/hmmemit.1.gz share/man/man1/hmmer.1.gz