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From: Brad Davis <brd@FreeBSD.org>
Date: Fri, 10 Apr 2015 15:39:01 +0000 (UTC)
To: ports-committers@freebsd.org, svn-ports-all@freebsd.org,
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Subject: svn commit: r383736 - head/biology/paml
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Author: brd
Date: Fri Apr 10 15:39:01 2015
New Revision: 383736
URL: https://svnweb.freebsd.org/changeset/ports/383736

Log:
  Update biology/paml to 4.8a and unbreak.
  
  PR:		199264
  Submitted by:	Joseph Mingrone <jrm@ftfl.ca>
  Approved by:	bdrewery (mentor)

Modified:
  head/biology/paml/Makefile
  head/biology/paml/distinfo

Modified: head/biology/paml/Makefile
==============================================================================
--- head/biology/paml/Makefile	Fri Apr 10 15:23:04 2015	(r383735)
+++ head/biology/paml/Makefile	Fri Apr 10 15:39:01 2015	(r383736)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	paml
-PORTVERSION=	4.8
+PORTVERSION=	4.8a
 CATEGORIES=	biology
 MASTER_SITES=	http://abacus.gene.ucl.ac.uk/software/
 DISTNAME=	${PORTNAME}${PORTVERSION}
@@ -10,10 +10,8 @@ DISTNAME=	${PORTNAME}${PORTVERSION}
 MAINTAINER=	jrm@ftfl.ca
 COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)
 
-BROKEN=		Unfetchable
-
 USES=		gmake tar:tgz
-WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}/src
+WRKSRC=		${WRKDIR}/${PORTNAME}4.8/src
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"
 
 BINARIES=	baseml basemlg chi2 codeml evolver pamp yn00
@@ -27,7 +25,7 @@ do-install:
 .endfor
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 .for f in ${DOC_FILES}
-	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}${PORTVERSION}/doc/${f} ${STAGEDIR}${DOCSDIR}
+	${INSTALL_DATA} ${WRKSRC}/../doc/${f} ${STAGEDIR}${DOCSDIR}
 .endfor
 
 .include <bsd.port.mk>

Modified: head/biology/paml/distinfo
==============================================================================
--- head/biology/paml/distinfo	Fri Apr 10 15:23:04 2015	(r383735)
+++ head/biology/paml/distinfo	Fri Apr 10 15:39:01 2015	(r383736)
@@ -1,2 +1,2 @@
-SHA256 (paml4.8.tgz) = 67498283308824cd5a3986db382bec275432e817f6719b8faf99fa2509f32781
-SIZE (paml4.8.tgz) = 4835110
+SHA256 (paml4.8a.tgz) = e45f37e1cfc1c24de276266a7bc2926fc12eac9602c56c1c025bc8f6dfb737f3
+SIZE (paml4.8a.tgz) = 5879158