From owner-svn-ports-all@freebsd.org Sun Apr 19 09:49:07 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 3F2712C0355; Sun, 19 Apr 2020 09:49:07 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 494lQq1HXwz3y3Y; Sun, 19 Apr 2020 09:49:07 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 270AB23C58; Sun, 19 Apr 2020 09:49:07 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 03J9n7oS028264; Sun, 19 Apr 2020 09:49:07 GMT (envelope-from danilo@FreeBSD.org) Received: (from danilo@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 03J9n2MI028241; Sun, 19 Apr 2020 09:49:02 GMT (envelope-from danilo@FreeBSD.org) Message-Id: <202004190949.03J9n2MI028241@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: danilo set sender to danilo@FreeBSD.org using -f From: Danilo Egea Gondolfo Date: Sun, 19 Apr 2020 09:49:02 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r532095 - in head: biology/hhsuite math/dbcsr math/dune-alugrid math/dune-common math/dune-geometry math/dune-grid math/dune-spgrid math/dune-typetree math/dune-uggrid math/fftw3 math/f... X-SVN-Group: ports-head X-SVN-Commit-Author: danilo X-SVN-Commit-Paths: in head: biology/hhsuite math/dbcsr math/dune-alugrid math/dune-common math/dune-geometry math/dune-grid math/dune-spgrid math/dune-typetree math/dune-uggrid math/fftw3 math/form math/mathgl math/moab... X-SVN-Commit-Revision: 532095 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 19 Apr 2020 09:49:07 -0000 Author: danilo Date: Sun Apr 19 09:49:02 2020 New Revision: 532095 URL: https://svnweb.freebsd.org/changeset/ports/532095 Log: - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) - Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is deprecated and will be removed) - Fix science/gromacs plist when MPI option is enabled - Bump PORTREVISION for all the consumers of net/openmpi Added: head/net/openmpi/files/ head/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c (contents, props changed) Modified: head/biology/hhsuite/Makefile head/math/dbcsr/Makefile head/math/dune-alugrid/Makefile head/math/dune-common/Makefile head/math/dune-geometry/Makefile head/math/dune-grid/Makefile head/math/dune-spgrid/Makefile head/math/dune-typetree/Makefile head/math/dune-uggrid/Makefile head/math/fftw3/Makefile head/math/form/Makefile head/math/mathgl/Makefile head/math/moab/Makefile head/math/parmgridgen/Makefile head/math/vtk8/Makefile head/misc/adios2/Makefile head/net/aluminum/Makefile head/net/openmpi/Makefile head/net/openmpi/distinfo head/net/openmpi/pkg-plist head/science/chrono/Makefile head/science/fvcom-mpi/Makefile head/science/gromacs/Makefile head/science/gromacs/pkg-plist head/science/hypre/Makefile head/science/lammps/Makefile head/science/latte/Makefile head/science/liggghts/Makefile head/science/pnetcdf/Makefile head/science/sparta/Makefile Modified: head/biology/hhsuite/Makefile ============================================================================== --- head/biology/hhsuite/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/biology/hhsuite/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= hhsuite DISTVERSIONPREFIX= v DISTVERSION= 3.2.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology science MAINTAINER= yuri@FreeBSD.org @@ -12,8 +12,7 @@ COMMENT= Remote protein homology detection suite LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= openmpi>0:net/openmpi -RUN_DEPENDS= openmpi>0:net/openmpi +LIB_DEPENDS= libmpi.so:net/openmpi USES= cmake compiler:c++11-lang perl5 python shebangfix SHEBANG_GLOB= *.pl *.py Modified: head/math/dbcsr/Makefile ============================================================================== --- head/math/dbcsr/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dbcsr/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dbcsr DISTVERSIONPREFIX= v DISTVERSION= 2.0.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-alugrid/Makefile ============================================================================== --- head/math/dune-alugrid/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-alugrid/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,6 +3,7 @@ PORTNAME= dune-alugrid DISTVERSIONPREFIX= v DISTVERSION= 2.6.0 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-common/Makefile ============================================================================== --- head/math/dune-common/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-common/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dune-common DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-geometry/Makefile ============================================================================== --- head/math/dune-geometry/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-geometry/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dune-geometry DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-grid/Makefile ============================================================================== --- head/math/dune-grid/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-grid/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dune-grid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-spgrid/Makefile ============================================================================== --- head/math/dune-spgrid/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-spgrid/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,6 +3,7 @@ PORTNAME= dune-spgrid DISTVERSIONPREFIX= v DISTVERSION= 2.6.0rc1.20200105 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-typetree/Makefile ============================================================================== --- head/math/dune-typetree/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-typetree/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dune-typetree DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dune-uggrid/Makefile ============================================================================== --- head/math/dune-uggrid/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/dune-uggrid/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= dune-uggrid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/fftw3/Makefile ============================================================================== --- head/math/fftw3/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/fftw3/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= fftw3 DISTVERSION= 3.3.8 -PORTREVISION?= 5 +PORTREVISION?= 6 CATEGORIES= math MASTER_SITES= http://www.fftw.org/ \ ftp://ftp.fftw.org/pub/fftw/ Modified: head/math/form/Makefile ============================================================================== --- head/math/form/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/form/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,6 +3,7 @@ PORTNAME= form PORTVERSION= 4.2.1 +PORTREVISION= 1 DISTVERSIONPREFIX= v CATEGORIES= math Modified: head/math/mathgl/Makefile ============================================================================== --- head/math/mathgl/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/mathgl/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -2,7 +2,7 @@ PORTNAME= mathgl DISTVERSION= 2.4.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/ Modified: head/math/moab/Makefile ============================================================================== --- head/math/moab/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/moab/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -2,6 +2,7 @@ PORTNAME= moab DISTVERSION= 5.1.1 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ @@ -18,7 +19,8 @@ LIB_DEPENDS= libhdf5.so:science/hdf5 \ USES= cmake:noninja compiler:c++11-lang eigen:3 fortran USE_LDCONFIG= yes -CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so +CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ + -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} Modified: head/math/parmgridgen/Makefile ============================================================================== --- head/math/parmgridgen/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/parmgridgen/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= parmgridgen PORTVERSION= 1.0 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= math science MASTER_SITES= http://www.mgnet.org/mgnet/Codes/parmgridgen/ \ http://www-users.cs.umn.edu/~moulitsa/download/ \ Modified: head/math/vtk8/Makefile ============================================================================== --- head/math/vtk8/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/math/vtk8/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -2,7 +2,7 @@ PORTNAME= vtk DISTVERSION= 8.1.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math graphics MASTER_SITES= http://www.vtk.org/files/release/${VTK_SHORT_VER}/ PKGNAMESUFFIX= 8 Modified: head/misc/adios2/Makefile ============================================================================== --- head/misc/adios2/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/misc/adios2/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,6 +3,7 @@ PORTNAME= adios2 DISTVERSIONPREFIX= v DISTVERSION= 2.5.0 +PORTREVISION= 1 CATEGORIES= misc science MAINTAINER= yuri@FreeBSD.org Modified: head/net/aluminum/Makefile ============================================================================== --- head/net/aluminum/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/net/aluminum/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -3,7 +3,7 @@ PORTNAME= Aluminum DISTVERSIONPREFIX= v DISTVERSION= 0.3.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= net MAINTAINER= yuri@FreeBSD.org Modified: head/net/openmpi/Makefile ============================================================================== --- head/net/openmpi/Makefile Sun Apr 19 09:32:30 2020 (r532094) +++ head/net/openmpi/Makefile Sun Apr 19 09:49:02 2020 (r532095) @@ -1,11 +1,7 @@ # $FreeBSD$ -# TODO: -# - etc/*.sample support - PORTNAME= openmpi -PORTVERSION= 1.10.7 -PORTREVISION= 7 +PORTVERSION= 4.0.3 CATEGORIES= net parallel MASTER_SITES= http://www.open-mpi.org/software/ompi/v${PORTVERSION:R}/downloads/ @@ -15,15 +11,20 @@ COMMENT= High Performance Message Passing Library LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +BROKEN_armv6= fails to package: pkg-static: mca_patcher_overwrite.la: No such file or directory +BROKEN_armv7= fails to package: pkg-static: mca_patcher_overwrite.la: No such file or directory +BROKEN_sparc64= fails to compile on sparc64 + LIB_DEPENDS= libhwloc.so:devel/hwloc \ libltdl.so:devel/libltdl \ - libevent.so:devel/libevent + libevent.so:devel/libevent \ + libmunge.so:security/munge -HAS_CONFIGURE= yes -INSTALL_TARGET= install-strip # :keepla because port uses lt_dlopen -USES= compiler:c11 fortran gmake libtool:keepla perl5 pkgconfig \ - tar:bzip2 +USES= fortran gmake libtool:keepla localbase perl5 \ + pkgconfig shebangfix tar:bzip2 + +HAS_CONFIGURE= yes USE_PERL5= build MPIBASE?= mpi @@ -32,33 +33,45 @@ MPIDIR?= ${MPIBASE}/${PKGBASE} PLIST_SUB+= MPIBASE=${MPIBASE} PLIST_SUB+= MPIDIR=${MPIDIR} +# Workaround for https://github.com/open-mpi/ompi/issues/7516 +CONFIGURE_ENV+= DISABLE_gds_ds12=1 DISABLE_gds_ds21=1 + CONFIGURE_ARGS+= --prefix=${PREFIX}/${MPIDIR} \ --mandir=${PREFIX}/${MPIDIR}/man \ --program-prefix= \ - --with-hwloc=${LOCALBASE} \ - --with-libltdl=${LOCALBASE} \ + --with-hwloc=external \ + --with-libltdl \ --enable-mpi-fortran=usempi \ + --enable-mpi-cxx \ + --enable-cxx-exceptions \ + --enable-mpi-thread-multiple \ --with-libevent=external \ + --enable-mca-no-build=verbs,btl_openib,oob_ud \ + --without-verbs \ --with-wrapper-ldflags=-Wl,-rpath=-Wl,-rpath=${LOCALBASE}/lib/gcc${_GCC_VER} \ ompi_cv_fortran_ignore_tkr_data=0 -LDFLAGS+= -L${LOCALBASE}/lib USE_LDCONFIG= ${PREFIX}/${MPIDIR}/lib \ ${PREFIX}/${MPIDIR}/lib/openmpi MANPREFIX= ${PREFIX}/${MPIDIR} -OPTIONS_DEFINE= IPV6 SLURM TORQUE VT +SHEBANG_FILES= ompi/mca/common/monitoring/profile2mat.pl \ + ompi/mca/common/monitoring/aggregate_profile.pl + +OPTIONS_DEFINE= DEBUG IPV6 SLURM TORQUE TORQUE_DESC= Enable Torque support SLURM_DESC= Enable SLURM support -VT_DESC= Enable VampirTrace support OPTIONS_DEFAULT= SLURM +OPTIONS_EXCLUDE_i386= SLURM OPTIONS_SUB= yes +DEBUG_CONFIGURE_ENABLE= debug +DEBUG_INSTALL_TARGET_OFF= install-strip + IPV6_CONFIGURE_ENABLE= ipv6 -TORQUE_CONFIGURE_ON= --with-tm=${LOCALBASE} -TORQUE_CONFIGURE_OFF= --without-tm +TORQUE_CONFIGURE_WITH= tm TORQUE_LIB_DEPENDS= libtorque.so:sysutils/torque TORQUE_PLIST_FILES= ${MPIDIR}/lib/openmpi/mca_plm_tm.so \ ${MPIDIR}/lib/openmpi/mca_plm_tm.la \ @@ -77,12 +90,20 @@ SLURM_PLIST_FILES= ${MPIDIR}/lib/openmpi/mca_ess_slurm ${MPIDIR}/lib/openmpi/mca_plm_slurm.so \ ${MPIDIR}/lib/openmpi/mca_ras_slurm.la \ ${MPIDIR}/lib/openmpi/mca_ras_slurm.so \ + ${MPIDIR}/lib/openmpi/mca_schizo_slurm.la \ + ${MPIDIR}/lib/openmpi/mca_schizo_slurm.so \ ${MPIDIR}/share/openmpi/help-plm-slurm.txt \ ${MPIDIR}/share/openmpi/help-ras-slurm.txt -VT_CONFIGURE_OFF= --enable-contrib-no-build=vt --disable-vt -VT_USE= JAVA=yes - -BROKEN_sparc64= Does not compile on sparc64 +post-patch: + @${REINPLACE_CMD} -e 's|$$(libdir)/pkgconfig|${PREFIX}/${MPIDIR}/libdata/pkgconfig|g' \ + ${WRKSRC}/ompi/tools/wrappers/Makefile.am \ + ${WRKSRC}/ompi/tools/wrappers/Makefile.in \ + ${WRKSRC}/opal/tools/wrappers/Makefile.am \ + ${WRKSRC}/opal/tools/wrappers/Makefile.in \ + ${WRKSRC}/orte/tools/wrappers/Makefile.am \ + ${WRKSRC}/orte/tools/wrappers/Makefile.in + @${REINPLACE_CMD} 's|define MCA_hwloc_external_.*header "|&${LOCALBASE}/include/|' \ + ${WRKSRC}/configure .include Modified: head/net/openmpi/distinfo ============================================================================== --- head/net/openmpi/distinfo Sun Apr 19 09:32:30 2020 (r532094) +++ head/net/openmpi/distinfo Sun Apr 19 09:49:02 2020 (r532095) @@ -1,3 +1,3 @@ -TIMESTAMP = 1497724776 -SHA256 (openmpi-1.10.7.tar.bz2) = a089ece151fec974905caa35b0a59039b227bdea4e7933069e94bee4ed0e5a90 -SIZE (openmpi-1.10.7.tar.bz2) = 13435131 +TIMESTAMP = 1586692006 +SHA256 (openmpi-4.0.3.tar.bz2) = 1402feced8c3847b3ab8252165b90f7d1fa28c23b6b2ca4632b6e4971267fd03 +SIZE (openmpi-4.0.3.tar.bz2) = 9856669 Added: head/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c Sun Apr 19 09:49:02 2020 (r532095) @@ -0,0 +1,20 @@ +--- opal/mca/pmix/pmix3x/pmix/src/mca/pshmem/mmap/pshmem_mmap.c.orig 2020-04-12 11:49:10 UTC ++++ opal/mca/pmix/pmix3x/pmix/src/mca/pshmem/mmap/pshmem_mmap.c +@@ -79,6 +79,9 @@ static int _mmap_segment_create(pmix_pshmem_seg_t *sm_ + if (0 != (rc = posix_fallocate(sm_seg->seg_id, 0, size))) { + pmix_output_verbose(2, pmix_globals.debug_output, + "sys call posix_fallocate(2) fail\n"); ++ if (EINVAL == rc) { ++ goto ftruncate; ++ } + if (ENOSPC == rc) { + rc = PMIX_ERR_OUT_OF_RESOURCE; + goto out; +@@ -98,6 +101,7 @@ static int _mmap_segment_create(pmix_pshmem_seg_t *sm_ + goto map_memory; + } + #endif ++ftruncate: + if (0 != ftruncate(sm_seg->seg_id, size)) { + pmix_output_verbose(2, pmix_globals.debug_output, + "sys call ftruncate(2) fail\n"); Modified: head/net/openmpi/pkg-plist ============================================================================== --- head/net/openmpi/pkg-plist Sun Apr 19 09:32:30 2020 (r532094) +++ head/net/openmpi/pkg-plist Sun Apr 19 09:49:02 2020 (r532095) @@ -1,3 +1,4 @@ +%%MPIDIR%%/bin/aggregate_profile.pl %%MPIDIR%%/bin/mpiCC %%MPIDIR%%/bin/mpic++ %%MPIDIR%%/bin/mpicc @@ -8,174 +9,24 @@ %%MPIDIR%%/bin/mpifort %%MPIDIR%%/bin/mpirun %%MPIDIR%%/bin/ompi-clean -%%MPIDIR%%/bin/ompi-ps %%MPIDIR%%/bin/ompi-server -%%MPIDIR%%/bin/ompi-top %%MPIDIR%%/bin/ompi_info %%MPIDIR%%/bin/opal_wrapper %%MPIDIR%%/bin/orte-clean -%%MPIDIR%%/bin/orte-dvm %%MPIDIR%%/bin/orte-info -%%MPIDIR%%/bin/orte-ps %%MPIDIR%%/bin/orte-server -%%MPIDIR%%/bin/orte-submit -%%MPIDIR%%/bin/orte-top %%MPIDIR%%/bin/ortecc -%%MPIDIR%%/bin/orterun %%MPIDIR%%/bin/orted -%%VT%%%%MPIDIR%%/bin/mpiCC-vt -%%VT%%%%MPIDIR%%/bin/mpic++-vt -%%VT%%%%MPIDIR%%/bin/mpicc-vt -%%VT%%%%MPIDIR%%/bin/mpicxx-vt -%%VT%%%%MPIDIR%%/bin/mpif77-vt -%%VT%%%%MPIDIR%%/bin/mpif90-vt -%%VT%%%%MPIDIR%%/bin/mpifort-vt -%%VT%%%%MPIDIR%%/bin/otfaux -%%VT%%%%MPIDIR%%/bin/otfcompress -%%VT%%%%MPIDIR%%/bin/otfconfig -%%VT%%%%MPIDIR%%/bin/otfdecompress -%%VT%%%%MPIDIR%%/bin/otfinfo -%%VT%%%%MPIDIR%%/bin/otfmerge -%%VT%%%%MPIDIR%%/bin/otfmerge-mpi -%%VT%%%%MPIDIR%%/bin/otfprint -%%VT%%%%MPIDIR%%/bin/otfprofile -%%VT%%%%MPIDIR%%/bin/otfprofile-mpi -%%VT%%%%MPIDIR%%/bin/otfshrink -%%VT%%%%MPIDIR%%/bin/vtCC -%%VT%%%%MPIDIR%%/bin/vtc++ -%%VT%%%%MPIDIR%%/bin/vtcc -%%VT%%%%MPIDIR%%/bin/vtcxx -%%VT%%%%MPIDIR%%/bin/vtf77 -%%VT%%%%MPIDIR%%/bin/vtf90 -%%VT%%%%MPIDIR%%/bin/vtfilter -%%VT%%%%MPIDIR%%/bin/vtfilter-mpi -%%VT%%%%MPIDIR%%/bin/vtfiltergen -%%VT%%%%MPIDIR%%/bin/vtfiltergen-mpi -%%VT%%%%MPIDIR%%/bin/vtfort -%%VT%%%%MPIDIR%%/bin/vtrun -%%VT%%%%MPIDIR%%/bin/vtsetup -%%VT%%%%MPIDIR%%/bin/vtsetup.jar -%%VT%%%%MPIDIR%%/bin/vtunify -%%VT%%%%MPIDIR%%/bin/vtunify-mpi -%%VT%%%%MPIDIR%%/bin/vtwrapper -%%VT%%%%MPIDIR%%/etc/vtsetup-config.dtd -%%VT%%%%MPIDIR%%/etc/vtsetup-config.xml -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_MsgMatching.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_State.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_Thumbnail.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_CopyHandler.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_CopyHandler_stream.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Definitions.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Errno.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_File.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_FileManager.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_File_iofsl.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Filenames.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_HandlerArray.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_KeyValue.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_MasterControl.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_RBuffer.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_RStream.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Reader.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Version.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_WBuffer.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_WStream.h 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-%%VT%%%%MPIDIR%%/share/vampirtrace/FILTER.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/GROUPS.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/METRICS.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/config.log -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/UserManual.html -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/UserManual.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otfprofile.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otfprofile_clustering.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otftools.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/specification.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/vtsetup/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/vtsetup/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/libtool -%%VT%%%%MPIDIR%%/share/vampirtrace/omp.h -%%VT%%%%MPIDIR%%/share/vampirtrace/vtCC-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtc++-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtcc-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtcxx-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtf77-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtf90-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtfort-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtsetup-data.dtd -%%VT%%%%MPIDIR%%/share/vampirtrace/vtsetup-data.xml +%%MPIDIR%%/bin/orterun +%%MPIDIR%%/bin/profile2mat.pl %%MPIDIR%%/%%ETCDIR%%-default-hostfile %%MPIDIR%%/%%ETCDIR%%-mca-params.conf %%MPIDIR%%/%%ETCDIR%%-totalview.tcl +%%MPIDIR%%/etc/pmix-mca-params.conf %%MPIDIR%%/include/mpi-ext.h %%MPIDIR%%/include/mpi.h %%MPIDIR%%/include/mpi_portable_platform.h +%%MPIDIR%%/include/mpif-c-constants-decl.h %%MPIDIR%%/include/mpif-config.h %%MPIDIR%%/include/mpif-constants.h %%MPIDIR%%/include/mpif-ext.h @@ -186,9 +37,15 @@ %%MPIDIR%%/include/mpif-sentinels.h %%MPIDIR%%/include/mpif-sizeof.h %%MPIDIR%%/include/mpif.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_affinity_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_cuda_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_pcollreq_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_pcollreq_mpifh.h +%%MPIDIR%%/include/openmpi/mpiext/pmpiext_pcollreq_c.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/comm.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/comm_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/constants.h +%%MPIDIR%%/include/openmpi/ompi/mpi/cxx/cxx_glue.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/datatype.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/datatype_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/errhandler.h @@ -217,49 +74,59 @@ %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/topology_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/win.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/win_inln.h +%%MPIDIR%%/lib/libmca_common_dstore.la +%%MPIDIR%%/lib/libmca_common_dstore.so +%%MPIDIR%%/lib/libmca_common_dstore.so.1 +%%MPIDIR%%/lib/libmca_common_dstore.so.1.0.2 +%%MPIDIR%%/lib/libmca_common_monitoring.la +%%MPIDIR%%/lib/libmca_common_monitoring.so +%%MPIDIR%%/lib/libmca_common_monitoring.so.50 +%%MPIDIR%%/lib/libmca_common_monitoring.so.50.10.0 +%%MPIDIR%%/lib/libmca_common_ompio.la +%%MPIDIR%%/lib/libmca_common_ompio.so +%%MPIDIR%%/lib/libmca_common_ompio.so.41 +%%MPIDIR%%/lib/libmca_common_ompio.so.41.19.3 %%MPIDIR%%/lib/libmca_common_sm.la %%MPIDIR%%/lib/libmca_common_sm.so -%%MPIDIR%%/lib/libmca_common_sm.so.4 -%%MPIDIR%%/lib/libmca_common_sm.so.4.0.4 +%%MPIDIR%%/lib/libmca_common_sm.so.40 +%%MPIDIR%%/lib/libmca_common_sm.so.40.20.0 %%MPIDIR%%/lib/libmpi.la %%MPIDIR%%/lib/libmpi.so -%%MPIDIR%%/lib/libmpi.so.12 -%%MPIDIR%%/lib/libmpi.so.12.0.7 +%%MPIDIR%%/lib/libmpi.so.40 +%%MPIDIR%%/lib/libmpi.so.40.20.3 %%MPIDIR%%/lib/libmpi_cxx.la %%MPIDIR%%/lib/libmpi_cxx.so -%%MPIDIR%%/lib/libmpi_cxx.so.1 -%%MPIDIR%%/lib/libmpi_cxx.so.1.1.3 +%%MPIDIR%%/lib/libmpi_cxx.so.40 +%%MPIDIR%%/lib/libmpi_cxx.so.40.20.1 %%MPIDIR%%/lib/libmpi_mpifh.la %%MPIDIR%%/lib/libmpi_mpifh.so -%%MPIDIR%%/lib/libmpi_mpifh.so.12 -%%MPIDIR%%/lib/libmpi_mpifh.so.12.0.1 +%%MPIDIR%%/lib/libmpi_mpifh.so.40 +%%MPIDIR%%/lib/libmpi_mpifh.so.40.20.2 %%MPIDIR%%/lib/libmpi_usempi.la %%MPIDIR%%/lib/libmpi_usempi.so -%%MPIDIR%%/lib/libmpi_usempi.so.5 -%%MPIDIR%%/lib/libmpi_usempi.so.5.2.0 +%%MPIDIR%%/lib/libmpi_usempi.so.40 +%%MPIDIR%%/lib/libmpi_usempi.so.40.20.0 %%MPIDIR%%/lib/libompitrace.la %%MPIDIR%%/lib/libompitrace.so -%%MPIDIR%%/lib/libompitrace.so.0 -%%MPIDIR%%/lib/libompitrace.so.0.0.0 +%%MPIDIR%%/lib/libompitrace.so.40 +%%MPIDIR%%/lib/libompitrace.so.40.20.0 %%MPIDIR%%/lib/libopen-pal.la %%MPIDIR%%/lib/libopen-pal.so -%%MPIDIR%%/lib/libopen-pal.so.13 -%%MPIDIR%%/lib/libopen-pal.so.13.0.4 +%%MPIDIR%%/lib/libopen-pal.so.40 +%%MPIDIR%%/lib/libopen-pal.so.40.20.3 %%MPIDIR%%/lib/libopen-rte.la %%MPIDIR%%/lib/libopen-rte.so -%%MPIDIR%%/lib/libopen-rte.so.12 -%%MPIDIR%%/lib/libopen-rte.so.12.0.4 +%%MPIDIR%%/lib/libopen-rte.so.40 +%%MPIDIR%%/lib/libopen-rte.so.40.20.3 %%MPIDIR%%/lib/mpi.mod +%%MPIDIR%%/lib/ompi_monitoring_prof.la +%%MPIDIR%%/lib/ompi_monitoring_prof.so %%MPIDIR%%/lib/openmpi/libompi_dbg_msgq.la %%MPIDIR%%/lib/openmpi/libompi_dbg_msgq.so %%MPIDIR%%/lib/openmpi/mca_allocator_basic.la %%MPIDIR%%/lib/openmpi/mca_allocator_basic.so %%MPIDIR%%/lib/openmpi/mca_allocator_bucket.la %%MPIDIR%%/lib/openmpi/mca_allocator_bucket.so -%%MPIDIR%%/lib/openmpi/mca_bcol_basesmuma.la -%%MPIDIR%%/lib/openmpi/mca_bcol_basesmuma.so -%%MPIDIR%%/lib/openmpi/mca_bcol_ptpcoll.la -%%MPIDIR%%/lib/openmpi/mca_bcol_ptpcoll.so %%MPIDIR%%/lib/openmpi/mca_bml_r2.la %%MPIDIR%%/lib/openmpi/mca_bml_r2.so %%MPIDIR%%/lib/openmpi/mca_btl_self.la @@ -272,14 +139,12 @@ %%MPIDIR%%/lib/openmpi/mca_btl_vader.so %%MPIDIR%%/lib/openmpi/mca_coll_basic.la %%MPIDIR%%/lib/openmpi/mca_coll_basic.so -%%MPIDIR%%/lib/openmpi/mca_coll_hierarch.la -%%MPIDIR%%/lib/openmpi/mca_coll_hierarch.so %%MPIDIR%%/lib/openmpi/mca_coll_inter.la %%MPIDIR%%/lib/openmpi/mca_coll_inter.so %%MPIDIR%%/lib/openmpi/mca_coll_libnbc.la %%MPIDIR%%/lib/openmpi/mca_coll_libnbc.so -%%MPIDIR%%/lib/openmpi/mca_coll_ml.la -%%MPIDIR%%/lib/openmpi/mca_coll_ml.so +%%MPIDIR%%/lib/openmpi/mca_coll_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_coll_monitoring.so %%MPIDIR%%/lib/openmpi/mca_coll_self.la %%MPIDIR%%/lib/openmpi/mca_coll_self.so %%MPIDIR%%/lib/openmpi/mca_coll_sm.la @@ -294,18 +159,6 @@ %%MPIDIR%%/lib/openmpi/mca_compress_gzip.so %%MPIDIR%%/lib/openmpi/mca_crs_none.la %%MPIDIR%%/lib/openmpi/mca_crs_none.so -%%MPIDIR%%/lib/openmpi/mca_db_hash.la -%%MPIDIR%%/lib/openmpi/mca_db_hash.so -%%MPIDIR%%/lib/openmpi/mca_db_print.la -%%MPIDIR%%/lib/openmpi/mca_db_print.so -%%MPIDIR%%/lib/openmpi/mca_dfs_app.la -%%MPIDIR%%/lib/openmpi/mca_dfs_app.so -%%MPIDIR%%/lib/openmpi/mca_dfs_orted.la -%%MPIDIR%%/lib/openmpi/mca_dfs_orted.so -%%MPIDIR%%/lib/openmpi/mca_dfs_test.la -%%MPIDIR%%/lib/openmpi/mca_dfs_test.so -%%MPIDIR%%/lib/openmpi/mca_dpm_orte.la -%%MPIDIR%%/lib/openmpi/mca_dpm_orte.so %%MPIDIR%%/lib/openmpi/mca_errmgr_default_app.la %%MPIDIR%%/lib/openmpi/mca_errmgr_default_app.so %%MPIDIR%%/lib/openmpi/mca_errmgr_default_hnp.la @@ -318,6 +171,8 @@ %%MPIDIR%%/lib/openmpi/mca_ess_env.so %%MPIDIR%%/lib/openmpi/mca_ess_hnp.la %%MPIDIR%%/lib/openmpi/mca_ess_hnp.so +%%MPIDIR%%/lib/openmpi/mca_ess_pmi.la +%%MPIDIR%%/lib/openmpi/mca_ess_pmi.so %%MPIDIR%%/lib/openmpi/mca_ess_singleton.la %%MPIDIR%%/lib/openmpi/mca_ess_singleton.so %%MPIDIR%%/lib/openmpi/mca_ess_tool.la @@ -326,64 +181,78 @@ %%MPIDIR%%/lib/openmpi/mca_fbtl_posix.so %%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic.la %%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic.so +%%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic_gen2.la +%%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic_gen2.so %%MPIDIR%%/lib/openmpi/mca_fcoll_individual.la %%MPIDIR%%/lib/openmpi/mca_fcoll_individual.so -%%MPIDIR%%/lib/openmpi/mca_fcoll_static.la -%%MPIDIR%%/lib/openmpi/mca_fcoll_static.so %%MPIDIR%%/lib/openmpi/mca_fcoll_two_phase.la %%MPIDIR%%/lib/openmpi/mca_fcoll_two_phase.so -%%MPIDIR%%/lib/openmpi/mca_fcoll_ylib.la -%%MPIDIR%%/lib/openmpi/mca_fcoll_ylib.so +%%MPIDIR%%/lib/openmpi/mca_fcoll_vulcan.la +%%MPIDIR%%/lib/openmpi/mca_fcoll_vulcan.so %%MPIDIR%%/lib/openmpi/mca_filem_raw.la %%MPIDIR%%/lib/openmpi/mca_filem_raw.so %%MPIDIR%%/lib/openmpi/mca_fs_ufs.la %%MPIDIR%%/lib/openmpi/mca_fs_ufs.so -%%MPIDIR%%/lib/openmpi/mca_grpcomm_bad.la -%%MPIDIR%%/lib/openmpi/mca_grpcomm_bad.so +%%MPIDIR%%/lib/openmpi/mca_grpcomm_direct.la +%%MPIDIR%%/lib/openmpi/mca_grpcomm_direct.so %%MPIDIR%%/lib/openmpi/mca_io_ompio.la %%MPIDIR%%/lib/openmpi/mca_io_ompio.so -%%MPIDIR%%/lib/openmpi/mca_io_romio.la -%%MPIDIR%%/lib/openmpi/mca_io_romio.so +%%MPIDIR%%/lib/openmpi/mca_io_romio321.la +%%MPIDIR%%/lib/openmpi/mca_io_romio321.so %%MPIDIR%%/lib/openmpi/mca_iof_hnp.la %%MPIDIR%%/lib/openmpi/mca_iof_hnp.so -%%MPIDIR%%/lib/openmpi/mca_iof_mr_hnp.la -%%MPIDIR%%/lib/openmpi/mca_iof_mr_hnp.so -%%MPIDIR%%/lib/openmpi/mca_iof_mr_orted.la -%%MPIDIR%%/lib/openmpi/mca_iof_mr_orted.so %%MPIDIR%%/lib/openmpi/mca_iof_orted.la %%MPIDIR%%/lib/openmpi/mca_iof_orted.so %%MPIDIR%%/lib/openmpi/mca_iof_tool.la %%MPIDIR%%/lib/openmpi/mca_iof_tool.so -%%MPIDIR%%/lib/openmpi/mca_mpool_grdma.la -%%MPIDIR%%/lib/openmpi/mca_mpool_grdma.so -%%MPIDIR%%/lib/openmpi/mca_mpool_sm.la -%%MPIDIR%%/lib/openmpi/mca_mpool_sm.so +%%MPIDIR%%/lib/openmpi/mca_mpool_hugepage.la +%%MPIDIR%%/lib/openmpi/mca_mpool_hugepage.so %%MPIDIR%%/lib/openmpi/mca_odls_default.la %%MPIDIR%%/lib/openmpi/mca_odls_default.so +%%MPIDIR%%/lib/openmpi/mca_odls_pspawn.la +%%MPIDIR%%/lib/openmpi/mca_odls_pspawn.so %%MPIDIR%%/lib/openmpi/mca_oob_tcp.la %%MPIDIR%%/lib/openmpi/mca_oob_tcp.so +%%MPIDIR%%/lib/openmpi/mca_osc_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_osc_monitoring.so %%MPIDIR%%/lib/openmpi/mca_osc_pt2pt.la %%MPIDIR%%/lib/openmpi/mca_osc_pt2pt.so +%%MPIDIR%%/lib/openmpi/mca_osc_rdma.la +%%MPIDIR%%/lib/openmpi/mca_osc_rdma.so %%MPIDIR%%/lib/openmpi/mca_osc_sm.la %%MPIDIR%%/lib/openmpi/mca_osc_sm.so +%%MPIDIR%%/lib/openmpi/mca_patcher_overwrite.la +%%MPIDIR%%/lib/openmpi/mca_patcher_overwrite.so %%MPIDIR%%/lib/openmpi/mca_plm_isolated.la %%MPIDIR%%/lib/openmpi/mca_plm_isolated.so %%MPIDIR%%/lib/openmpi/mca_plm_rsh.la %%MPIDIR%%/lib/openmpi/mca_plm_rsh.so -%%MPIDIR%%/lib/openmpi/mca_pml_bfo.la -%%MPIDIR%%/lib/openmpi/mca_pml_bfo.so +%%MPIDIR%%/lib/openmpi/mca_pmix_flux.la +%%MPIDIR%%/lib/openmpi/mca_pmix_flux.so +%%MPIDIR%%/lib/openmpi/mca_pmix_isolated.la +%%MPIDIR%%/lib/openmpi/mca_pmix_isolated.so +%%MPIDIR%%/lib/openmpi/mca_pmix_pmix3x.la +%%MPIDIR%%/lib/openmpi/mca_pmix_pmix3x.so %%MPIDIR%%/lib/openmpi/mca_pml_cm.la %%MPIDIR%%/lib/openmpi/mca_pml_cm.so +%%MPIDIR%%/lib/openmpi/mca_pml_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_pml_monitoring.so %%MPIDIR%%/lib/openmpi/mca_pml_ob1.la %%MPIDIR%%/lib/openmpi/mca_pml_ob1.so %%MPIDIR%%/lib/openmpi/mca_pstat_test.la %%MPIDIR%%/lib/openmpi/mca_pstat_test.so -%%MPIDIR%%/lib/openmpi/mca_pubsub_orte.la -%%MPIDIR%%/lib/openmpi/mca_pubsub_orte.so %%MPIDIR%%/lib/openmpi/mca_ras_simulator.la %%MPIDIR%%/lib/openmpi/mca_ras_simulator.so -%%MPIDIR%%/lib/openmpi/mca_rcache_vma.la -%%MPIDIR%%/lib/openmpi/mca_rcache_vma.so +%%MPIDIR%%/lib/openmpi/mca_rcache_grdma.la +%%MPIDIR%%/lib/openmpi/mca_rcache_grdma.so +%%MPIDIR%%/lib/openmpi/mca_reachable_weighted.la +%%MPIDIR%%/lib/openmpi/mca_reachable_weighted.so +%%MPIDIR%%/lib/openmpi/mca_regx_fwd.la +%%MPIDIR%%/lib/openmpi/mca_regx_fwd.so +%%MPIDIR%%/lib/openmpi/mca_regx_naive.la +%%MPIDIR%%/lib/openmpi/mca_regx_naive.so +%%MPIDIR%%/lib/openmpi/mca_regx_reverse.la +%%MPIDIR%%/lib/openmpi/mca_regx_reverse.so %%MPIDIR%%/lib/openmpi/mca_rmaps_mindist.la %%MPIDIR%%/lib/openmpi/mca_rmaps_mindist.so %%MPIDIR%%/lib/openmpi/mca_rmaps_ppr.la @@ -396,26 +265,22 @@ %%MPIDIR%%/lib/openmpi/mca_rmaps_round_robin.so %%MPIDIR%%/lib/openmpi/mca_rmaps_seq.la %%MPIDIR%%/lib/openmpi/mca_rmaps_seq.so -%%MPIDIR%%/lib/openmpi/mca_rmaps_staged.la -%%MPIDIR%%/lib/openmpi/mca_rmaps_staged.so %%MPIDIR%%/lib/openmpi/mca_rml_oob.la %%MPIDIR%%/lib/openmpi/mca_rml_oob.so %%MPIDIR%%/lib/openmpi/mca_routed_binomial.la %%MPIDIR%%/lib/openmpi/mca_routed_binomial.so -%%MPIDIR%%/lib/openmpi/mca_routed_debruijn.la -%%MPIDIR%%/lib/openmpi/mca_routed_debruijn.so %%MPIDIR%%/lib/openmpi/mca_routed_direct.la %%MPIDIR%%/lib/openmpi/mca_routed_direct.so %%MPIDIR%%/lib/openmpi/mca_routed_radix.la %%MPIDIR%%/lib/openmpi/mca_routed_radix.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmsocket.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmsocket.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmuma.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmuma.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_p2p.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_p2p.so -%%MPIDIR%%/lib/openmpi/mca_sec_basic.la -%%MPIDIR%%/lib/openmpi/mca_sec_basic.so +%%MPIDIR%%/lib/openmpi/mca_rtc_hwloc.la +%%MPIDIR%%/lib/openmpi/mca_rtc_hwloc.so +%%MPIDIR%%/lib/openmpi/mca_schizo_flux.la +%%MPIDIR%%/lib/openmpi/mca_schizo_flux.so +%%MPIDIR%%/lib/openmpi/mca_schizo_ompi.la +%%MPIDIR%%/lib/openmpi/mca_schizo_ompi.so +%%MPIDIR%%/lib/openmpi/mca_schizo_orte.la +%%MPIDIR%%/lib/openmpi/mca_schizo_orte.so %%MPIDIR%%/lib/openmpi/mca_sharedfp_individual.la %%MPIDIR%%/lib/openmpi/mca_sharedfp_individual.so %%MPIDIR%%/lib/openmpi/mca_sharedfp_lockedfile.la @@ -430,31 +295,63 @@ %%MPIDIR%%/lib/openmpi/mca_shmem_sysv.so %%MPIDIR%%/lib/openmpi/mca_state_app.la %%MPIDIR%%/lib/openmpi/mca_state_app.so -%%MPIDIR%%/lib/openmpi/mca_state_dvm.la -%%MPIDIR%%/lib/openmpi/mca_state_dvm.so %%MPIDIR%%/lib/openmpi/mca_state_hnp.la %%MPIDIR%%/lib/openmpi/mca_state_hnp.so %%MPIDIR%%/lib/openmpi/mca_state_novm.la %%MPIDIR%%/lib/openmpi/mca_state_novm.so %%MPIDIR%%/lib/openmpi/mca_state_orted.la %%MPIDIR%%/lib/openmpi/mca_state_orted.so -%%MPIDIR%%/lib/openmpi/mca_state_staged_hnp.la -%%MPIDIR%%/lib/openmpi/mca_state_staged_hnp.so -%%MPIDIR%%/lib/openmpi/mca_state_staged_orted.la -%%MPIDIR%%/lib/openmpi/mca_state_staged_orted.so %%MPIDIR%%/lib/openmpi/mca_state_tool.la %%MPIDIR%%/lib/openmpi/mca_state_tool.so %%MPIDIR%%/lib/openmpi/mca_topo_basic.la %%MPIDIR%%/lib/openmpi/mca_topo_basic.so +%%MPIDIR%%/lib/openmpi/mca_topo_treematch.la +%%MPIDIR%%/lib/openmpi/mca_topo_treematch.so %%MPIDIR%%/lib/openmpi/mca_vprotocol_pessimist.la %%MPIDIR%%/lib/openmpi/mca_vprotocol_pessimist.so -%%MPIDIR%%/lib/pkgconfig/ompi-c.pc -%%MPIDIR%%/lib/pkgconfig/ompi-cxx.pc -%%MPIDIR%%/lib/pkgconfig/ompi-f77.pc -%%MPIDIR%%/lib/pkgconfig/ompi-f90.pc -%%MPIDIR%%/lib/pkgconfig/ompi-fort.pc -%%MPIDIR%%/lib/pkgconfig/ompi.pc -%%MPIDIR%%/lib/pkgconfig/orte.pc +%%MPIDIR%%/lib/pmix/mca_bfrops_v12.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v12.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v20.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v20.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v21.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v21.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v3.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v3.so +%%MPIDIR%%/lib/pmix/mca_gds_hash.la +%%MPIDIR%%/lib/pmix/mca_gds_hash.so +%%MPIDIR%%/lib/pmix/mca_plog_default.la +%%MPIDIR%%/lib/pmix/mca_plog_default.so +%%MPIDIR%%/lib/pmix/mca_plog_stdfd.la +%%MPIDIR%%/lib/pmix/mca_plog_stdfd.so +%%MPIDIR%%/lib/pmix/mca_plog_syslog.la +%%MPIDIR%%/lib/pmix/mca_plog_syslog.so +%%MPIDIR%%/lib/pmix/mca_pnet_tcp.la +%%MPIDIR%%/lib/pmix/mca_pnet_tcp.so +%%MPIDIR%%/lib/pmix/mca_pnet_test.la +%%MPIDIR%%/lib/pmix/mca_pnet_test.so +%%MPIDIR%%/lib/pmix/mca_preg_native.la +%%MPIDIR%%/lib/pmix/mca_preg_native.so +%%MPIDIR%%/lib/pmix/mca_psec_native.la +%%MPIDIR%%/lib/pmix/mca_psec_native.so +%%MPIDIR%%/lib/pmix/mca_psec_none.la +%%MPIDIR%%/lib/pmix/mca_psec_none.so +%%MPIDIR%%/lib/pmix/mca_psensor_file.la +%%MPIDIR%%/lib/pmix/mca_psensor_file.so +%%MPIDIR%%/lib/pmix/mca_psensor_heartbeat.la +%%MPIDIR%%/lib/pmix/mca_psensor_heartbeat.so +%%MPIDIR%%/lib/pmix/mca_pshmem_mmap.la +%%MPIDIR%%/lib/pmix/mca_pshmem_mmap.so +%%MPIDIR%%/lib/pmix/mca_ptl_tcp.la +%%MPIDIR%%/lib/pmix/mca_ptl_tcp.so +%%MPIDIR%%/lib/pmix/mca_ptl_usock.la +%%MPIDIR%%/lib/pmix/mca_ptl_usock.so +%%MPIDIR%%/libdata/pkgconfig/ompi-c.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-cxx.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-f77.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-f90.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-fort.pc +%%MPIDIR%%/libdata/pkgconfig/ompi.pc +%%MPIDIR%%/libdata/pkgconfig/orte.pc %%MPIDIR%%/man/man1/mpiCC.1.gz %%MPIDIR%%/man/man1/mpic++.1.gz %%MPIDIR%%/man/man1/mpicc.1.gz @@ -465,21 +362,38 @@ %%MPIDIR%%/man/man1/mpifort.1.gz %%MPIDIR%%/man/man1/mpirun.1.gz %%MPIDIR%%/man/man1/ompi-clean.1.gz -%%MPIDIR%%/man/man1/ompi-ps.1.gz %%MPIDIR%%/man/man1/ompi-server.1.gz -%%MPIDIR%%/man/man1/ompi-top.1.gz %%MPIDIR%%/man/man1/ompi_info.1.gz %%MPIDIR%%/man/man1/opal_wrapper.1.gz %%MPIDIR%%/man/man1/orte-clean.1.gz -%%MPIDIR%%/man/man1/orte-dvm.1.gz %%MPIDIR%%/man/man1/orte-info.1.gz -%%MPIDIR%%/man/man1/orte-ps.1.gz %%MPIDIR%%/man/man1/orte-server.1.gz -%%MPIDIR%%/man/man1/orte-submit.1.gz -%%MPIDIR%%/man/man1/orte-top.1.gz %%MPIDIR%%/man/man1/orted.1.gz %%MPIDIR%%/man/man1/orterun.1.gz %%MPIDIR%%/man/man3/MPI.3.gz +%%MPIDIR%%/man/man3/MPIX_Allgather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Allgatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Allreduce_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoall_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoallv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoallw_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Barrier_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Bcast_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Exscan_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Gather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Gatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_allgather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_allgatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoall_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoallv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoallw_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Query_cuda_support.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_scatter_block_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_scatter_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scan_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scatter_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scatterv_init.3.gz %%MPIDIR%%/man/man3/MPI_Abort.3.gz %%MPIDIR%%/man/man3/MPI_Accumulate.3.gz %%MPIDIR%%/man/man3/MPI_Add_error_class.3.gz @@ -583,10 +497,14 @@ %%MPIDIR%%/man/man3/MPI_File_get_type_extent.3.gz %%MPIDIR%%/man/man3/MPI_File_get_view.3.gz %%MPIDIR%%/man/man3/MPI_File_iread.3.gz +%%MPIDIR%%/man/man3/MPI_File_iread_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iread_at.3.gz +%%MPIDIR%%/man/man3/MPI_File_iread_at_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iread_shared.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite.3.gz +%%MPIDIR%%/man/man3/MPI_File_iwrite_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite_at.3.gz +%%MPIDIR%%/man/man3/MPI_File_iwrite_at_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite_shared.3.gz %%MPIDIR%%/man/man3/MPI_File_open.3.gz %%MPIDIR%%/man/man3/MPI_File_preallocate.3.gz @@ -709,6 +627,8 @@ %%MPIDIR%%/man/man3/MPI_Keyval_create.3.gz %%MPIDIR%%/man/man3/MPI_Keyval_free.3.gz %%MPIDIR%%/man/man3/MPI_Lookup_name.3.gz +%%MPIDIR%%/man/man3/MPI_Message_c2f.3.gz +%%MPIDIR%%/man/man3/MPI_Message_f2c.3.gz %%MPIDIR%%/man/man3/MPI_Mprobe.3.gz %%MPIDIR%%/man/man3/MPI_Mrecv.3.gz %%MPIDIR%%/man/man3/MPI_Neighbor_allgather.3.gz @@ -717,6 +637,7 @@ %%MPIDIR%%/man/man3/MPI_Neighbor_alltoallv.3.gz %%MPIDIR%%/man/man3/MPI_Neighbor_alltoallw.3.gz %%MPIDIR%%/man/man3/MPI_Op_c2f.3.gz +%%MPIDIR%%/man/man3/MPI_Op_commutative.3.gz %%MPIDIR%%/man/man3/MPI_Op_create.3.gz %%MPIDIR%%/man/man3/MPI_Op_f2c.3.gz %%MPIDIR%%/man/man3/MPI_Op_free.3.gz @@ -887,6 +808,7 @@ %%MPIDIR%%/man/man3/MPI_Win_wait.3.gz %%MPIDIR%%/man/man3/MPI_Wtick.3.gz %%MPIDIR%%/man/man3/MPI_Wtime.3.gz +%%MPIDIR%%/man/man3/OMPI_Affinity_str.3.gz %%MPIDIR%%/man/man3/OpenMPI.3.gz %%MPIDIR%%/man/man7/ompi_crcp.7.gz %%MPIDIR%%/man/man7/opal_crs.7.gz @@ -898,38 +820,26 @@ %%MPIDIR%%/%%DATADIR%%/help-btl-vader.txt %%MPIDIR%%/%%DATADIR%%/help-coll-sync.txt %%MPIDIR%%/%%DATADIR%%/help-dash-host.txt -%%MPIDIR%%/%%DATADIR%%/help-db-base.txt %%MPIDIR%%/%%DATADIR%%/help-errmgr-base.txt %%MPIDIR%%/%%DATADIR%%/help-ess-base.txt -%%MPIDIR%%/%%DATADIR%%/help-ess-hnp.txt %%MPIDIR%%/%%DATADIR%%/help-hostfile.txt %%MPIDIR%%/%%DATADIR%%/help-mca-base.txt %%MPIDIR%%/%%DATADIR%%/help-mca-bml-r2.txt %%MPIDIR%%/%%DATADIR%%/help-mca-coll-base.txt -%%MPIDIR%%/%%DATADIR%%/help-mca-op-base.txt +%%MPIDIR%%/%%DATADIR%%/help-mca-hook-base.txt %%MPIDIR%%/%%DATADIR%%/help-mca-var.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-api.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-base.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-sm.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-tcp.txt -%%MPIDIR%%/%%DATADIR%%/help-mpi-coll-ml.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-coll-sm.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-common-sm.txt *** DIFF OUTPUT TRUNCATED AT 1000 LINES ***