Date: Sun, 13 Sep 2020 13:41:49 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/gabedit] Failed for gabedit-2.5.1_4 in build Message-ID: <202009131341.08DDfn4D097724@beefy18.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/science/gabedit/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p548441_s365678/logs/gabedit-2.5.1_4.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p548441_s365678 Log: =>> Building science/gabedit build started at Sun Sep 13 13:39:16 UTC 2020 port directory: /usr/ports/science/gabedit package name: gabedit-2.5.1_4 building for: FreeBSD head-amd64-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300114 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/gabedit/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300114 Job Id: 11 !!! Jail is newer than host. (Jail: 1300114, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300114 UNAME_v=FreeBSD 13.0-CURRENT 1300114 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gabedit-2.5.1_4: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gabedit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gabedit/work HOME=/wrkdirs/usr/ports/science/gabedit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gabedit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/gabedit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gabedit/work HOME=/wrkdirs/usr/ports/science/gabedit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gabedit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gabedit" EXAMPLESDIR="share/examples/gabedit" DATADIR="share/gabedit" WWWDIR="www/gabedit" ETCDIR="etc/gabedit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gabedit DOCSDIR=/usr/local/share/doc/gabedit EXAMPLESDIR=/usr/local/share/examples/gabedit WWWDIR=/usr/local/www/gabedit ETCDIR=/usr/local/etc/gabedit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300114 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.4.txz [head-amd64-default-job-11] Installing pkg-1.15.4... [head-amd64-default-job-11] Extracting pkg-1.15.4: .......... done ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gabedit-2.5.1_4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_4 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_4 for building => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_4 for building ===> Extracting for gabedit-2.5.1_4 => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for gabedit-2.5.1_4 =========================================================================== =======================<phase: build-depends >============================ ===> gabedit-2.5.1_4 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [head-amd64-default-job-11] Installing gmake-4.3_2... [head-amd64-default-job-11] `-- Installing gettext-runtime-0.21... [head-amd64-default-job-11] | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-11] | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-11] `-- Extracting gettext-runtime-0.21: .......... done [head-amd64-default-job-11] Extracting gmake-4.3_2: .......... done <snip> cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditGaussianInput.c -o GabeditGaussianInput.o SemiEmpiricalDlg.c:1312:13: warning: unused function 'runGeneric' [-Wunused-function] static void runGeneric(MoleculeSE* mol, char* fileName, char* keys, char* genericCommand) ^ make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/VibrationalCorrections' make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/IsotopeDistribution' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculator.c -o IsotopeDistributionCalculator.o 1 warning generated. make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/SemiEmpirical' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculatorDlg.c -o IsotopeDistributionCalculatorDlg.o make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/QFF' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit2MRQFF.c -o Gabedit2MRQFF.o make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/IsotopeDistribution' make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/Crystallography' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Crystallo.c -o Crystallo.o Crystallo.c:51:13: warning: unused function 'transposeMatrix3D' [-Wunused-function] static void transposeMatrix3D(gdouble mat[][3]) ^ make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/QFF' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCIF.c -o UtilsCIF.o UtilsCIF.c:198:13: warning: unused function 'print_block' [-Wunused-function] static void print_block(GList* list) ^ 1 warning generated. make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/gl2ps' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include gl2ps.c -o gl2ps.o gl2ps.c:4171:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] double dmax = ~1UL; ~~~~ ^~~~ gl2ps.c:4215:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] double dmax = ~1UL; ~~~~ ^~~~ gl2ps.c:4241:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] double dmax = ~1UL; ~~~~ ^~~~ 1 warning generated. cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditSPG.c -o GabeditSPG.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditKPoints.c -o GabeditKPoints.o make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/Crystallography' make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/spglib' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include arithmetic.c -o arithmetic.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include cell.c -o cell.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include debug.c -o debug.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include delaunay.c -o delaunay.o 3 warnings generated. make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/gl2ps' cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include determination.c -o determination.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include hall_symbol.c -o hall_symbol.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kgrid.c -o kgrid.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kpoint.c -o kpoint.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include mathfunc.c -o mathfunc.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include niggli.c -o niggli.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include overlap.c -o overlap.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include pointgroup.c -o pointgroup.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include primitive.c -o primitive.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include refinement.c -o refinement.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include sitesym_database.c -o sitesym_database.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include site_symmetry.c -o site_symmetry.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spacegroup.c -o spacegroup.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spg_database.c -o spg_database.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib.c -o spglib.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib_f.c -o spglib_f.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spin.c -o spin.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include symmetry.c -o symmetry.o cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include tetrahedron_method.c -o tetrahedron_method.o make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/spglib' mkdir -p tmp cp src/Common/*.o src/Spectrum/*.o src/Files/*.o src/DeMon/*.o src/Gamess/*.o src/Gaussian/*.o src/Geometry/*.o src/MolecularMechanics/*.o src/Molcas/*.o src/Molpro/*.o src/Mopac/*.o src/MPQC/*.o src/MultiGrid/*.o src/NetWork/*.o src/Display/*.o src/FireFly/*.o src/NWChem/*.o src/Psicode/*.o src/Orca/*.o src/QChem/*.o src/SemiEmpirical/*.o src/Utils/*.o src/Symmetry/*.o src/VibrationalCorrections/*.o src/QFF/*.o src/IsotopeDistribution/*.o src/Crystallography/*.o gl2ps/*.o spglib/*.o tmp cc -fstack-protector-strong tmp/*.o -o gabedit -lX11 `pkg-config gtk+-2.0 --libs` -lpangox-1.0 `pkg-config gtkglext-1.0 --libs` -L/usr/local/lib -lGL -L/usr/lib -lGLU -lpthread -L/usr/local/lib -lgomp -g -lm ld: error: duplicate symbol: AOAvailable >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(AOAvailable) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x204) ld: error: duplicate symbol: AOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(AOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x118) ld: error: duplicate symbol: CancelCalcul >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(CancelCalcul) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x21C) ld: error: duplicate symbol: CoefAlphaOrbitals >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(CoefAlphaOrbitals) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x168) ld: error: duplicate symbol: CoefBetaOrbitals >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(CoefBetaOrbitals) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x188) ld: error: duplicate symbol: DeleteContours >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(DeleteContours) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x218) ld: error: duplicate symbol: EnerAlphaOrbitals >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(EnerAlphaOrbitals) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x178) ld: error: duplicate symbol: EnerBetaOrbitals >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(EnerBetaOrbitals) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x190) ld: error: duplicate symbol: FontStyle >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(FontStyle) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0xE8) ld: error: duplicate symbol: GLArea >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(GLArea) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0xD0) ld: error: duplicate symbol: GeomOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(GeomOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0xD8) ld: error: duplicate symbol: NAOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NAOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x138) ld: error: duplicate symbol: NAlphaOcc >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NAlphaOcc) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x14C) ld: error: duplicate symbol: NAlphaOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NAlphaOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x140) ld: error: duplicate symbol: NBetaOcc >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NBetaOcc) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x150) ld: error: duplicate symbol: NBetaOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NBetaOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x144) ld: error: duplicate symbol: NOrb >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NOrb) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x13C) ld: error: duplicate symbol: NTotOcc >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NTotOcc) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x148) ld: error: duplicate symbol: Ntype >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(Ntype) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x134) ld: error: duplicate symbol: NumPoints >>> defined at AnimationContours.c >>> tmp/AnimationContours.o:(NumPoints) >>> defined at AnimationGeomConv.c >>> tmp/AnimationGeomConv.o:(.bss+0x40) ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[1]: *** [Makefile:79: gabedit] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/gabedit
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