From owner-freebsd-pkg-fallout@freebsd.org Mon Apr 8 14:44:04 2019 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C4D7C15819CD for ; Mon, 8 Apr 2019 14:44:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 608807469C for ; Mon, 8 Apr 2019 14:44:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 243C115819CC; Mon, 8 Apr 2019 14:44:03 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id DD81615819CB for ; Mon, 8 Apr 2019 14:44:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 8AA657469B for ; Mon, 8 Apr 2019 14:44:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy16.nyi.freebsd.org (beefy16.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6703424CE3 for ; Mon, 8 Apr 2019 14:44:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy16.nyi.freebsd.org (localhost [127.0.0.1]) by beefy16.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id x38Ei2hk046904 for ; Mon, 8 Apr 2019 14:44:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy16.nyi.freebsd.org (8.15.2/8.15.2/Submit) id x38Ei2XS046902; Mon, 8 Apr 2019 14:44:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 8 Apr 2019 14:44:02 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201904081444.x38Ei2XS046902@beefy16.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv7-default][biology/prodigy-lig] Failed for prodigy-lig-1.0.0.3 in configure X-Rspamd-Queue-Id: 8AA657469B X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.98 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-1.000,0]; NEURAL_HAM_SHORT(-0.98)[-0.978,0]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 08 Apr 2019 14:44:04 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/biology/prodigy-lig/Makefile 492059 2019-02-03 18:49:23Z yuri $ Log URL: http://beefy16.nyi.freebsd.org/data/head-armv7-default/p498219_s345783/logs/prodigy-lig-1.0.0.3.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p498219_s345783 Log: =>> Building biology/prodigy-lig build started at Mon Apr 8 14:43:07 UTC 2019 port directory: /usr/ports/biology/prodigy-lig package name: prodigy-lig-1.0.0.3 building for: FreeBSD head-armv7-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300017 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/prodigy-lig/Makefile 492059 2019-02-03 18:49:23Z yuri $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1300017 Job Id: 02 !!! Jail is newer than host. (Jail: 1300017, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300017 UNAME_v=FreeBSD 13.0-CURRENT 1300017 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/prodigy-lig/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work HOME=/wrkdirs/usr/ports/biology/prodigy-lig/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/prodigy-lig/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd13 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/prodigy-lig" EXAMPLESDIR="share/examples/prodigy-lig" DATADIR="share/prodigy-lig" WWWDIR="www/prodigy-lig" ETCDIR="etc/prodigy-lig" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/prodigy-lig DOCSDIR=/usr/local/share/doc/prodigy-lig EXAMPLESDIR=/usr/local/share/examples/prodigy-lig WWWDIR=/usr/local/www/prodigy-lig ETCDIR=/usr/local/etc/prodigy-lig --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300017 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License APACHE20 accepted by the user =========================================================================== =================================================== ===> prodigy-lig-1.0.0.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-armv7-default-job-02] Installing pkg-1.10.5_5... [head-armv7-default-job-02] Extracting pkg-1.10.5_5: .......... done ===> prodigy-lig-1.0.0.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of prodigy-lig-1.0.0.3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License APACHE20 accepted by the user [head-armv7-default-job-02] | | `-- Installing binutils-2.32,1... [head-armv7-default-job-02] | | `-- Installing gettext-runtime-0.19.8.1_2... [head-armv7-default-job-02] | | | `-- Installing indexinfo-0.3.1... [head-armv7-default-job-02] | | | `-- Extracting indexinfo-0.3.1: .... done [head-armv7-default-job-02] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [head-armv7-default-job-02] | | `-- Extracting binutils-2.32,1: .......... done [head-armv7-default-job-02] | | `-- Installing gmp-6.1.2_1... [head-armv7-default-job-02] | | `-- Extracting gmp-6.1.2_1: .......... done [head-armv7-default-job-02] | | `-- Installing mpc-1.1.0_2... [head-armv7-default-job-02] | | `-- Installing mpfr-4.0.2... [head-armv7-default-job-02] | | `-- Extracting mpfr-4.0.2: .......... done [head-armv7-default-job-02] | | `-- Extracting mpc-1.1.0_2: ......... done [head-armv7-default-job-02] | `-- Extracting gcc8-8.3.0_1: .......... done [head-armv7-default-job-02] `-- Extracting blas-3.5.0_5: ....... done [head-armv7-default-job-02] `-- Installing cblas-1.0_10... [head-armv7-default-job-02] `-- Extracting cblas-1.0_10: ......... done [head-armv7-default-job-02] `-- Installing lapack-3.5.0_6... [head-armv7-default-job-02] `-- Extracting lapack-3.5.0_6: .......... done [head-armv7-default-job-02] `-- Installing py36-setuptools-40.8.0... [head-armv7-default-job-02] | `-- Installing python36-3.6.8_1... [head-armv7-default-job-02] | | `-- Installing libffi-3.2.1_3... [head-armv7-default-job-02] | | `-- Extracting libffi-3.2.1_3: .......... done [head-armv7-default-job-02] | | `-- Installing readline-7.0.5... [head-armv7-default-job-02] | | `-- Extracting readline-7.0.5: .......... done [head-armv7-default-job-02] | `-- Extracting python36-3.6.8_1: .......... done [head-armv7-default-job-02] `-- Extracting py36-setuptools-40.8.0: .......... done [head-armv7-default-job-02] `-- Installing suitesparse-5.2.0_2... [head-armv7-default-job-02] | `-- Installing metis-5.1.0_7... [head-armv7-default-job-02] | `-- Extracting metis-5.1.0_7: .......... done [head-armv7-default-job-02] | `-- Installing openblas-0.2.20_7,1... [head-armv7-default-job-02] | `-- Extracting openblas-0.2.20_7,1: ......... done [head-armv7-default-job-02] `-- Extracting suitesparse-5.2.0_2: .......... done [head-armv7-default-job-02] Extracting py36-numpy-1.16.1,1: .......... done Message from gcc8-8.3.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_10: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python36-3.6.8_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> prodigy-lig-1.0.0.3 depends on package: py36-numpy>0 - found ===> Returning to build of prodigy-lig-1.0.0.3 ===> prodigy-lig-1.0.0.3 depends on package: py36-biopython>0 - not found ===> Installing existing package /packages/All/py36-biopython-1.73.txz [head-armv7-default-job-02] Installing py36-biopython-1.73... [head-armv7-default-job-02] `-- Installing py36-reportlab-3.5.18... [head-armv7-default-job-02] | `-- Installing adobe-cmaps-20051217_4... [head-armv7-default-job-02] | | `-- Installing fontconfig-2.12.6,1... [head-armv7-default-job-02] | | `-- Installing expat-2.2.6_1... [head-armv7-default-job-02] | | `-- Extracting expat-2.2.6_1: .......... done [head-armv7-default-job-02] | | `-- Installing freetype2-2.9.1... [head-armv7-default-job-02] | | `-- Extracting freetype2-2.9.1: .......... done [head-armv7-default-job-02] | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [head-armv7-default-job-02] | | `-- Installing mkfontscale-1.2.1... [head-armv7-default-job-02] | | `-- Installing libfontenc-1.1.4... [head-armv7-default-job-02] | | `-- Extracting libfontenc-1.1.4: ......... done [head-armv7-default-job-02] | | `-- Extracting mkfontscale-1.2.1: ....... done [head-armv7-default-job-02] | `-- Extracting adobe-cmaps-20051217_4: .......... done [head-armv7-default-job-02] | `-- Installing py36-pillow-5.3.0... [head-armv7-default-job-02] | | `-- Installing jpeg-turbo-2.0.2... [head-armv7-default-job-02] | | `-- Extracting jpeg-turbo-2.0.2: .......... done [head-armv7-default-job-02] | | `-- Installing openjpeg-2.3.1... [head-armv7-default-job-02] | | `-- Installing lcms2-2.9... [head-armv7-default-job-02] | | | `-- Installing tiff-4.0.10... [head-armv7-default-job-02] | | | `-- Installing jbigkit-2.1_1... [head-armv7-default-job-02] | | | `-- Extracting jbigkit-2.1_1: .......... done [head-armv7-default-job-02] | | | `-- Extracting tiff-4.0.10: .......... done [head-armv7-default-job-02] | | `-- Extracting lcms2-2.9: .......... done [head-armv7-default-job-02] | | `-- Installing png-1.6.36... [head-armv7-default-job-02] | | `-- Extracting png-1.6.36: .......... done [head-armv7-default-job-02] | | `-- Extracting openjpeg-2.3.1: .......... done [head-armv7-default-job-02] | | `-- Installing py36-tkinter-3.6.8_6... [head-armv7-default-job-02] | | `-- Installing tcl86-8.6.9_1... [head-armv7-default-job-02] | | `-- Extracting tcl86-8.6.9_1: .......... done [head-armv7-default-job-02] | | `-- Installing tk86-8.6.9_1... [head-armv7-default-job-02] | | | `-- Installing libX11-1.6.7,1... [head-armv7-default-job-02] | | | `-- Installing libXau-1.0.9... [head-armv7-default-job-02] | | | `-- Extracting libXau-1.0.9: .......... done [head-armv7-default-job-02] | | | `-- Installing libXdmcp-1.1.3... [head-armv7-default-job-02] | | | | `-- Installing xorgproto-2018.4... [head-armv7-default-job-02] | | | | `-- Extracting xorgproto-2018.4: .......... done [head-armv7-default-job-02] | | | `-- Extracting libXdmcp-1.1.3: ......... done [head-armv7-default-job-02] | | | `-- Installing libxcb-1.13.1... [head-armv7-default-job-02] | | | | `-- Installing libpthread-stubs-0.4... [head-armv7-default-job-02] | | | | `-- Extracting libpthread-stubs-0.4: .... done [head-armv7-default-job-02] | | | | `-- Installing libxml2-2.9.8... [head-armv7-default-job-02] | | | | `-- Extracting libxml2-2.9.8: .......... done [head-armv7-default-job-02] | | | `-- Extracting libxcb-1.13.1: .......... done [head-armv7-default-job-02] | | | `-- Extracting libX11-1.6.7,1: .......... done [head-armv7-default-job-02] | | | `-- Installing libXScrnSaver-1.2.3_2... [head-armv7-default-job-02] | | | `-- Installing libXext-1.3.3_3,1... [head-armv7-default-job-02] | | | `-- Extracting libXext-1.3.3_3,1: .......... done [head-armv7-default-job-02] | | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done [head-armv7-default-job-02] | | | `-- Installing libXft-2.3.2_3... [head-armv7-default-job-02] | | | `-- Installing libXrender-0.9.10_2... [head-armv7-default-job-02] | | | `-- Extracting libXrender-0.9.10_2: .......... done [head-armv7-default-job-02] | | | `-- Extracting libXft-2.3.2_3: .......... done [head-armv7-default-job-02] | | `-- Extracting tk86-8.6.9_1: .......... done [head-armv7-default-job-02] | | `-- Extracting py36-tkinter-3.6.8_6: ........ done [head-armv7-default-job-02] | | `-- Installing webp-1.0.2... [head-armv7-default-job-02] | | `-- Installing giflib-5.1.4... [head-armv7-default-job-02] | | `-- Extracting giflib-5.1.4: .......... done [head-armv7-default-job-02] | | `-- Extracting webp-1.0.2: .......... done [head-armv7-default-job-02] | `-- Extracting py36-pillow-5.3.0: .......... done [head-armv7-default-job-02] `-- Extracting py36-reportlab-3.5.18: .......... done [head-armv7-default-job-02] Extracting py36-biopython-1.73: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). ===> prodigy-lig-1.0.0.3 depends on package: py36-biopython>0 - found ===> Returning to build of prodigy-lig-1.0.0.3 ===> prodigy-lig-1.0.0.3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-armv7-default-job-02] Installing gmake-4.2.1_3... [head-armv7-default-job-02] Extracting gmake-4.2.1_3: .......... done ===> prodigy-lig-1.0.0.3 depends on executable: gmake - found ===> Returning to build of prodigy-lig-1.0.0.3 ===> prodigy-lig-1.0.0.3 depends on package: py36-setuptools>0 - found ===> prodigy-lig-1.0.0.3 depends on file: /usr/local/bin/python3.6 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for prodigy-lig-1.0.0.3 prodigy_lig depends on Biopython. Please install Biopython along with its dependencies and restart. *** Error code 1 Stop. make: stopped in /usr/ports/biology/prodigy-lig