From owner-svn-ports-all@freebsd.org Fri Oct 13 11:14:55 2017 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 31B1DE44CDF; Fri, 13 Oct 2017 11:14:55 +0000 (UTC) (envelope-from bapt@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 0D7B42F5; Fri, 13 Oct 2017 11:14:54 +0000 (UTC) (envelope-from bapt@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id v9DBEs5F052607; Fri, 13 Oct 2017 11:14:54 GMT (envelope-from bapt@FreeBSD.org) Received: (from bapt@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id v9DBErFV052601; Fri, 13 Oct 2017 11:14:53 GMT (envelope-from bapt@FreeBSD.org) Message-Id: <201710131114.v9DBErFV052601@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: bapt set sender to bapt@FreeBSD.org using -f From: Baptiste Daroussin Date: Fri, 13 Oct 2017 11:14:53 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r451982 - in head/biology: ariadne biococoa crux plink ssaha tRNAscan-SE X-SVN-Group: ports-head X-SVN-Commit-Author: bapt X-SVN-Commit-Paths: in head/biology: ariadne biococoa crux plink ssaha tRNAscan-SE X-SVN-Commit-Revision: 451982 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 13 Oct 2017 11:14:55 -0000 Author: bapt Date: Fri Oct 13 11:14:53 2017 New Revision: 451982 URL: https://svnweb.freebsd.org/changeset/ports/451982 Log: Mark as broken ports with no public distfiles Modified: head/biology/ariadne/Makefile head/biology/biococoa/Makefile head/biology/crux/Makefile head/biology/plink/Makefile head/biology/ssaha/Makefile head/biology/tRNAscan-SE/Makefile Modified: head/biology/ariadne/Makefile ============================================================================== --- head/biology/ariadne/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/ariadne/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -11,6 +11,8 @@ COMMENT= Programs to compare protein sequences and pro WRKSRC= ${WRKDIR}/SRC-${PORTVERSION} +BROKEN= No public distfiles + PLIST_FILES+= bin/ariadne bin/prospero USES= gmake tar:Z PORTDOCS= README Modified: head/biology/biococoa/Makefile ============================================================================== --- head/biology/biococoa/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/biococoa/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -4,7 +4,7 @@ PORTNAME= biococoa PORTVERSION= 2.2.2 PORTREVISION= 3 CATEGORIES= biology gnustep -MASTER_SITES= http://bioinformatics.org/biococoa/downloads/ DEBIAN/pool/main/b/biococoa.app +MASTER_SITES= http://bioinformatics.org/biococoa/downloads/ DISTNAME= biococoa-${PORTVERSION}-src EXTRACT_SUFX= .tgz Modified: head/biology/crux/Makefile ============================================================================== --- head/biology/crux/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/crux/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -13,6 +13,7 @@ COMMENT= Software toolkit for phylogenetic inference LICENSE= BSD2CLAUSE BSD3CLAUSE LICENSE_COMB= multi +BROKEN= No public distfiles BROKEN_aarch64= Fails to link: ImportError: /lib/libgcc_s.so.1: version GCC_4.5.0 required by /usr/local/lib/gcc5/libgfortran.so.3 not found BROKEN_armv6= Fails to link: ImportError: /usr/local/lib/gcc49/libgfortran.so.3: Undefined symbol "__aeabi_ldivmod" Modified: head/biology/plink/Makefile ============================================================================== --- head/biology/plink/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/plink/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}-src MAINTAINER= bacon4000@gmail.com COMMENT= Whole genome association analysis toolset +BROKEN= no public distfiles + LICENSE= GPLv2 LIB_DEPENDS= liblapack.so:math/lapack Modified: head/biology/ssaha/Makefile ============================================================================== --- head/biology/ssaha/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/ssaha/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//} MAINTAINER= ports@FreeBSD.org COMMENT= Very fast matching and alignment of DNA sequences +BROKEN= No public distfiles + NO_WRKSUBDIR= yes BUILD_WRKSRC= ${WRKSRC}/Binary Modified: head/biology/tRNAscan-SE/Makefile ============================================================================== --- head/biology/tRNAscan-SE/Makefile Fri Oct 13 11:14:32 2017 (r451981) +++ head/biology/tRNAscan-SE/Makefile Fri Oct 13 11:14:53 2017 (r451982) @@ -10,6 +10,8 @@ MASTER_SITES= ftp://selab.janelia.org/pub/software/tRN MAINTAINER= ports@FreeBSD.org COMMENT= Improved tool for transfer RNA detection +BROKEN= No public distfiles + USES= perl5 tar:Z MAKE_ARGS= BINDIR="${PREFIX}/bin" \ LIBDIR="${DATADIR}" \