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Thu, 21 Jan 2021 03:21:19 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 10L3LJAn093636; Thu, 21 Jan 2021 03:21:19 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 10L3LIcx093630; Thu, 21 Jan 2021 03:21:18 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202101210321.10L3LIcx093630@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Thu, 21 Jan 2021 03:21:18 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r562172 - in head/science: . py-dipy X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/science: . py-dipy X-SVN-Commit-Revision: 562172 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 21 Jan 2021 03:21:19 -0000 Author: yuri Date: Thu Jan 21 03:21:18 2021 New Revision: 562172 URL: https://svnweb.freebsd.org/changeset/ports/562172 Log: New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging Added: head/science/py-dipy/ head/science/py-dipy/Makefile (contents, props changed) head/science/py-dipy/distinfo (contents, props changed) head/science/py-dipy/pkg-descr (contents, props changed) head/science/py-dipy/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Thu Jan 21 03:05:07 2021 (r562171) +++ head/science/Makefile Thu Jan 21 03:21:18 2021 (r562172) @@ -230,6 +230,7 @@ SUBDIR += py-chainer-chemistry SUBDIR += py-chempy SUBDIR += py-coards + SUBDIR += py-dipy SUBDIR += py-dlib SUBDIR += py-eccodes SUBDIR += py-esda Added: head/science/py-dipy/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-dipy/Makefile Thu Jan 21 03:21:18 2021 (r562172) @@ -0,0 +1,29 @@ +# $FreeBSD$ + +PORTNAME= dipy +DISTVERSION= 1.3.0 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Python toolbox for analysis of MR diffusion imaging + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +PY_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} +BUILD_DEPENDS= ${PY_DEPENDS} +RUN_DEPENDS= ${PY_DEPENDS} + +USES= python:3.6+ +USE_PYTHON= distutils cython concurrent autoplist # pkg-plist also exists and contains files missing from the python-generated plist + +post-install: + ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*/*.so + +.include Added: head/science/py-dipy/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-dipy/distinfo Thu Jan 21 03:21:18 2021 (r562172) @@ -0,0 +1,3 @@ +TIMESTAMP = 1611196381 +SHA256 (dipy-1.3.0.tar.gz) = c5be00719a01f63be0e22eed389eaa0ec2423a863e16a83dea3e9eeaa9cf6034 +SIZE (dipy-1.3.0.tar.gz) = 11703845 Added: head/science/py-dipy/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-dipy/pkg-descr Thu Jan 21 03:21:18 2021 (r562172) @@ -0,0 +1,7 @@ +DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods +for spatial normalization, signal processing, machine learning, statistical +analysis and visualization of medical images. Additionally, it contains +specialized methods for computational anatomy including diffusion, perfusion and +structural imaging. + +WWW: https://dipy.org/ Added: head/science/py-dipy/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-dipy/pkg-plist Thu Jan 21 03:21:18 2021 (r562172) @@ -0,0 +1,4 @@ +%%PYTHON_SITELIBDIR%%/dipy/COMMIT_INFO.txt +%%PYTHON_SITELIBDIR%%/dipy/__config__.py +%%PYTHON_SITELIBDIR%%/dipy/__pycache__/__config__.cpython-37.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/__pycache__/__config__.cpython-37.pyc