Date: Fri, 7 Dec 2018 00:10:06 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r486812 - in head/biology: . groopm Message-ID: <201812070010.wB70A6D7063225@repo.freebsd.org>
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Author: yuri Date: Fri Dec 7 00:10:05 2018 New Revision: 486812 URL: https://svnweb.freebsd.org/changeset/ports/486812 Log: New port: math/groopm: Metagenomic binning suite Added: head/biology/groopm/ head/biology/groopm/Makefile (contents, props changed) head/biology/groopm/distinfo (contents, props changed) head/biology/groopm/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Dec 7 00:04:10 2018 (r486811) +++ head/biology/Makefile Fri Dec 7 00:10:05 2018 (r486812) @@ -42,6 +42,7 @@ SUBDIR += gmap SUBDIR += gperiodic SUBDIR += grappa + SUBDIR += groopm SUBDIR += hmmer SUBDIR += htslib SUBDIR += hyphy Added: head/biology/groopm/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/groopm/Makefile Fri Dec 7 00:10:05 2018 (r486812) @@ -0,0 +1,24 @@ +# $FreeBSD$ + +PORTNAME= GroopM +DISTVERSION= 0.3.4 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Metagenomic binning suite + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.10.1:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tables>=2.3:devel/py-tables@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils noflavors autoplist + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/groopm/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/groopm/distinfo Fri Dec 7 00:10:05 2018 (r486812) @@ -0,0 +1,3 @@ +TIMESTAMP = 1544140602 +SHA256 (GroopM-0.3.4.tar.gz) = 48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080 +SIZE (GroopM-0.3.4.tar.gz) = 127707 Added: head/biology/groopm/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/groopm/pkg-descr Fri Dec 7 00:10:05 2018 (r486812) @@ -0,0 +1,7 @@ +GroopM is a metagenomic binning toolset. It leverages spatio-temoral +dynamics (differential coverage) to accurately (and almost automatically) +extract population genomes from multi-sample metagenomic datasets. + +GroopM is largely parameter-free. Use: groopm -h for more info. + +WWW: http://ecogenomics.github.io/GroopM/
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