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Tue, 4 Oct 2022 04:06:27 GMT (envelope-from git) Date: Tue, 4 Oct 2022 04:06:27 GMT Message-Id: <202210040406.29446R9s028925@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: c8a9968da25a - main - science/py-atomium: New port: Molecular modeller and file parser List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: c8a9968da25a57597a29511b65cc66f78b212096 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=c8a9968da25a57597a29511b65cc66f78b212096 commit c8a9968da25a57597a29511b65cc66f78b212096 Author: Yuri Victorovich AuthorDate: 2022-10-04 04:05:49 +0000 Commit: Yuri Victorovich CommitDate: 2022-10-04 04:06:22 +0000 science/py-atomium: New port: Molecular modeller and file parser --- science/Makefile | 1 + science/py-atomium/Makefile | 33 +++++++++++++++++++++++++++++++++ science/py-atomium/distinfo | 3 +++ science/py-atomium/pkg-descr | 2 ++ 4 files changed, 39 insertions(+) diff --git a/science/Makefile b/science/Makefile index a05b9a0a20e2..ac5de659d887 100644 --- a/science/Makefile +++ b/science/Makefile @@ -277,6 +277,7 @@ SUBDIR += py-asdf-standard SUBDIR += py-asdf-transform-schemas SUBDIR += py-ase + SUBDIR += py-atomium SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chainer diff --git a/science/py-atomium/Makefile b/science/py-atomium/Makefile new file mode 100644 index 000000000000..8917627c227a --- /dev/null +++ b/science/py-atomium/Makefile @@ -0,0 +1,33 @@ +PORTNAME= atomium +DISTVERSIONPREFIX= v +DISTVERSION= 1.0.11 +CATEGORIES= science biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Molecular modeller and file parser +WWW= https://atomium.bio/ + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coveralls>0:devel/py-coveralls@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}msgpack>=0.6.1:devel/py-msgpack@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}paramiko>0:security/py-paramiko@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}rmsd>0:science/py-rmsd@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}sphinx_rtd_theme>0:textproc/py-sphinx_rtd_theme@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}valerius>=0.2:biology/py-valerius@${PY_FLAVOR} +BUILD_DEPENDS= ${PY_DEPENDS} +RUN_DEPENDS= ${PY_DEPENDS} + +USES= python +USE_PYTHON= distutils autoplist pytest + +USE_GITHUB= yes +GH_ACCOUNT= samirelanduk + +.include diff --git a/science/py-atomium/distinfo b/science/py-atomium/distinfo new file mode 100644 index 000000000000..913297e6bd91 --- /dev/null +++ b/science/py-atomium/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1664851734 +SHA256 (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = f26fec07ab7777032e2f829e4338021543f5ccbd76f59dc47c12decc9b1ebe88 +SIZE (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = 21454532 diff --git a/science/py-atomium/pkg-descr b/science/py-atomium/pkg-descr new file mode 100644 index 000000000000..2be0d2ab7bd1 --- /dev/null +++ b/science/py-atomium/pkg-descr @@ -0,0 +1,2 @@ +atomium is a molecular modeller and file parser, capable of reading from and +writing to .pdb, .cif and .mmtf files.