Date: Thu, 15 Dec 2005 16:10:38 -0300 From: Fernan Aguero <fernan@iib.unsam.edu.ar> To: FreeBSD Ports <ports@FreeBSD.ORG> Subject: need help from a C programmer Message-ID: <20051215191038.GH49639@iib.unsam.edu.ar>
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Hi! I need help from someone with experience in C programming, and knowledge of FreeBSD specifics. I'm trying to build Jim Kentīs BLAT on FreeBSD http://www.soe.ucsc.edu/~kent/src/blat33Src.zip I've already got some progress, and a few patches, with help from the author and UCSC staff. But I've come to an obstacle that I (no C knowledge) can't fix. [ ... ] cd hg/pslPretty && gmake gmake[1]: Entering directory `/scratch/fernan/ports/blat/work/blatSrc/hg/pslPret ty' gcc34 -ggdb -o ../../bin/i386/pslPretty pslPretty.o ../../lib/i386/jkweb.a -lm pslPretty.o: In function `prettyOutString': pslPretty.o(.text+0x668): undefined reference to `__ctype_b_loc' pslPretty.o: In function `pslPretty': pslPretty.o(.text+0x116d): undefined reference to `stdout' collect2: ld returned 1 exit status gmake[1]: *** [pslPretty] Error 1 The authors also are intrigued: "stdout at least is about as basic and common of a C symbol as you can get. It looks like pslPretty isn't using ctype directly, but through isalpha() which is nearly as common as stdout" I, can't help much, but perhaps someone in the list has some clue as to what might be going on? My draft port is here http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.shar.gz And the complete output here http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.out.gz Thanks in advance, Fernan
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