Date: Thu, 2 Apr 2015 15:41:32 +0000 (UTC) From: Dmitry Marakasov <amdmi3@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r383013 - head/biology/hmmer Message-ID: <201504021541.t32FfWOG035952@svn.freebsd.org>
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Author: amdmi3 Date: Thu Apr 2 15:41:31 2015 New Revision: 383013 URL: https://svnweb.freebsd.org/changeset/ports/383013 Log: - Remove deprecated option - Tweak compiler flags - Add LICENSE - Pass maintainership to submitter PR: 199066 Submitted by: jwbacon@tds.net Modified: head/biology/hmmer/Makefile Modified: head/biology/hmmer/Makefile ============================================================================== --- head/biology/hmmer/Makefile Thu Apr 2 15:35:27 2015 (r383012) +++ head/biology/hmmer/Makefile Thu Apr 2 15:41:31 2015 (r383013) @@ -3,37 +3,44 @@ PORTNAME= hmmer PORTVERSION= 3.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \ http://selab.janelia.org/software/hmmer3/3.0/ -MAINTAINER= ports@FreeBSD.org +MAINTAINER= jwbacon@tds.net COMMENT= Profile hidden Markov models for biological sequence analysis +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + GNU_CONFIGURE= yes USES= perl5 -CONFIGURE_ARGS+=--enable-threads --enable-lfs +CONFIGURE_ARGS+=--enable-threads DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \ HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \ Pkinase.hmm fn3.out globins4.out minifam minifam.h3m -OPTIONS_DEFINE= PVM DOCS EXAMPLES -PVM_DESC= PVM support +OPTIONS_DEFINE= DOCS EXAMPLES + +.include <bsd.port.options.mk> -PVM_CONFIGURE_ENV= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD" -PVM_CONFIGURE_WITH= pvm -PVM_BUILD_DEPENDS= pvm:${PORTSDIR}/net/pvm +# HMMER is useless without SSE and any PC in use today should support it +# Should probably also do enable-vmx on Power processors to enable +# Altivec/VMX, but I don't have a machine to test this. +.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386" +CONFIGURE_ARGS+=--enable-sse +.endif post-install: + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/* (cd ${WRKSRC}/documentation/man; for i in *.man; do \ ${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \ done) - @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR} - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
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