Date: Fri, 21 Dec 2018 09:06:07 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 112i386-default][science/erkale] Failed for erkale-g20181121_3 in build Message-ID: <201812210906.wBL967uW046037@beefy10.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/erkale/Makefile 487568 2018-12-16 09:21:04Z yuri $ Log URL: http://beefy10.nyi.freebsd.org/data/112i386-default/487820/logs/erkale-g20181121_3.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=112i386-default&build=487820 Log: =>> Building science/erkale build started at Fri Dec 21 08:49:06 UTC 2018 port directory: /usr/ports/science/erkale package name: erkale-g20181121_3 building for: FreeBSD 112i386-default-job-10 11.2-RELEASE-p7 FreeBSD 11.2-RELEASE-p7 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/erkale/Makefile 487568 2018-12-16 09:21:04Z yuri $ Poudriere version: 3.2.8 Host OSVERSION: 1300002 Jail OSVERSION: 1102000 Job Id: 10 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p7 UNAME_r=11.2-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/112i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/112i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/112i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=parallel DEPENDS_ARGS= MAKE_ARGS= FLAVOR=parallel ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for erkale-g20181121_3: ====> Linear algebra library: you have to select exactly one of them NETLIB=on: Blas implementation from Netlib OPENBLAS=off: OpenBLAS blas implementation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/erkale/work-parallel XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/erkale/work-parallel HOME=/wrkdirs/usr/ports/science/erkale/work-parallel TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/erkale/work-parallel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/erkale/work-parallel XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/erkale/work-parallel HOME=/wrkdirs/usr/ports/science/erkale/work-parallel TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/erkale/work-parallel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="clang70" CFLAGS="-O2 -pipe -fstack-protector -fno-strict -aliasing " CPP="clang-cpp70" CPPFLAGS="" LDFLAGS=" /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector " LIBS="" CXX="clang++70" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SUFFIX="_omp" CMAKE_BUILD_TYPE="release" OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/erkale" EXAMPLESDIR="share/examples/erkale" DATADIR="share/erkale" WWWDIR="www/erkale" ETCDIR="etc/erkale" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/erkale DOCSDIR=/usr/local/share/doc/erkale EXAMPLESDIR=/usr/local/share/examples/erkale WWWDIR=/usr/local/www/erkale ETCDIR=/usr/local/etc/erkale --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p7 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> erkale-g20181121_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [112i386-default-job-10] Installing pkg-1.10.5_5... [112i386-default-job-10] Extracting pkg-1.10.5_5: .......... done ===> erkale-g20181121_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of erkale-g20181121_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20181121_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20181121_3 for building => SHA256 Checksum OK for susilehtola-erkale-g20181121-0927d8c_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20181121_3 for building ===> Extracting for erkale-g20181121_3 => SHA256 Checksum OK for susilehtola-erkale-g20181121-0927d8c_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for erkale-g20181121_3 ===> Applying FreeBSD patches for erkale-g20181121_3 =========================================================================== =======================<phase: build-depends >============================ ===> erkale-g20181121_3 depends on package: armadillo>0 - not found ===> Installing existing package /packages/All/armadillo-9.200.6.txz [112i386-default-job-10] Installing armadillo-9.200.6... [112i386-default-job-10] `-- Installing arpack-ng-3.6.3_2... <snip> cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -D_ROHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp [ 4%] Generating scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /bin/cat /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-includes.cpp.in >/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-fock.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-fock.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -D_ROHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-fock.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-fock.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-fock.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-fock.cpp [ 5%] Generating scf-force.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /bin/cat /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-includes.cpp.in >/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-force.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-force.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-force.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-force.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-force.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-force.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-force.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -x c++ -E -fopenmp=libomp -DUNRESTRICTED -DDFT /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/scf-force.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-force.cpp [ 6%] Generating eriworker_routines.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && ./eriworker_gentransform > /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/eriworker_routines.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /bin/cat /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/eriworker.cpp >> /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/eriworker_routines.cpp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/CMakeFiles/liberkale.dir/DependInfo.cmake Scanning dependencies of target liberkale /usr/bin/make -f src/CMakeFiles/liberkale.dir/build.make src/CMakeFiles/liberkale.dir/build [ 6%] Building CXX object src/CMakeFiles/liberkale.dir/basis.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/basis.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/basis.cpp [ 7%] Building CXX object src/CMakeFiles/liberkale.dir/basislibrary.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/basislibrary.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/basislibrary.cpp [ 8%] Building CXX object src/CMakeFiles/liberkale.dir/boys.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/boys.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/boys.cpp [ 9%] Building CXX object src/CMakeFiles/liberkale.dir/stringutil.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/stringutil.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/stringutil.cpp [ 10%] Building CXX object src/CMakeFiles/liberkale.dir/mathf.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/mathf.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/mathf.cpp [ 10%] Building CXX object src/CMakeFiles/liberkale.dir/integrals.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/integrals.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/integrals.cpp [ 11%] Building CXX object src/CMakeFiles/liberkale.dir/eri_digest.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale.dir/eri_digest.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/eri_digest.cpp [ 12%] Building CXX object src/CMakeFiles/liberkale.dir/eritable.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_EXPORTS 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/usr/local/lib/libsz.so -lz -ldl -lm CMakeFiles/liberkale.dir/checkpoint.cpp.o: In function `tempname()': checkpoint.cpp:(.text+0x70f7): warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/cmake -E cmake_symlink_library liberkale_omp.so.0.1.0 liberkale_omp.so.0.1.0 liberkale_omp.so [ 52%] Built target liberkale /usr/bin/make -f src/emd/CMakeFiles/liberkale_emd.dir/build.make src/emd/CMakeFiles/liberkale_emd.dir/depend cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd /wrkdirs/usr/ports/science/erkale/work-parallel/.build /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd/CMakeFiles/liberkale_emd.dir/DependInfo.cmake Scanning dependencies of target liberkale_emd /usr/bin/make -f src/emd/CMakeFiles/liberkale_emd.dir/build.make src/emd/CMakeFiles/liberkale_emd.dir/build [ 52%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/emd.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/emd.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/emd.cpp [ 53%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/emd_gto.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/emd_gto.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/emd_gto.cpp [ 54%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/emd_sto.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/emd_sto.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/emd_sto.cpp [ 55%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/emdcube.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/emdcube.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/emdcube.cpp [ 55%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/gto_fourier.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/gto_fourier.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/gto_fourier.cpp [ 56%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/spherical_expansion.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/spherical_expansion.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/spherical_expansion.cpp [ 57%] Building CXX object src/emd/CMakeFiles/liberkale_emd.dir/emd_similarity.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -Dliberkale_emd_EXPORTS -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_emd.dir/emd_similarity.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/emd/emd_similarity.cpp [ 58%] Linking CXX shared library liberkale_emd_omp.so cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/liberkale_emd.dir/link.txt --verbose=1 /usr/local/bin/clang++70 -fPIC -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector -shared -Wl,-soname,liberkale_emd_omp.so.0.1.0 -o liberkale_emd_omp.so.0.1.0 CMakeFiles/liberkale_emd.dir/emd.cpp.o CMakeFiles/liberkale_emd.dir/emd_gto.cpp.o CMakeFiles/liberkale_emd.dir/emd_sto.cpp.o CMakeFiles/liberkale_emd.dir/emdcube.cpp.o CMakeFiles/liberkale_emd.dir/gto_fourier.cpp.o CMakeFiles/liberkale_emd.dir/spherical_expansion.cpp.o CMakeFiles/liberkale_emd.dir/emd_similarity.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src:/usr/local/lib: ../liberkale_omp.so.0.1.0 -lrt /usr/local/lib/libgsl.so -llapack -lint -lderiv /usr/local/lib/libxc.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so -lz -ldl -lm cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd && /usr/local/bin/cmake -E cmake_symlink_library liberkale_emd_omp.so.0.1.0 liberkale_emd_omp.so.0.1.0 liberkale_emd_omp.so [ 58%] Built target liberkale_emd /usr/bin/make -f src/CMakeFiles/erkale_loc.dir/build.make src/CMakeFiles/erkale_loc.dir/depend cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/CMakeFiles/erkale_loc.dir/DependInfo.cmake Scanning dependencies of target erkale_loc /usr/bin/make -f src/CMakeFiles/erkale_loc.dir/build.make src/CMakeFiles/erkale_loc.dir/build [ 59%] Building CXX object src/CMakeFiles/erkale_loc.dir/localize.cpp.o cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/clang++70 -DARMA_DONT_USE_WRAPPER -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing -o CMakeFiles/erkale_loc.dir/localize.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-0927d8c/src/localize.cpp [ 59%] Linking CXX executable erkale_loc_omp cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/erkale_loc.dir/link.txt --verbose=1 /usr/local/bin/clang++70 -O2 -pipe -fstack-protector -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector -fno-strict-aliasing /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector CMakeFiles/erkale_loc.dir/localize.cpp.o -o erkale_loc_omp -Wl,-rpath,/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/emd:/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src:/usr/local/lib: emd/liberkale_emd_omp.so.0.1.0 liberkale_omp.so.0.1.0 -lrt /usr/local/lib/libgsl.so -llapack -lint -lderiv /usr/local/lib/libxc.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so -lz -ldl -lm liberkale_omp.so.0.1.0: undefined reference to `__atomic_compare_exchange' emd/liberkale_emd_omp.so.0.1.0: undefined reference to `__atomic_load' clang-7: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build *** Error code 1 Stop. make: stopped in /usr/ports/science/erkale
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