Date: Tue, 21 Feb 2017 10:41:08 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][biology/tinker] Failed for tinker-7.1.3_1 in build Message-ID: <201702211041.v1LAf8qA089227@beefy15.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2017Q1/biology/tinker/Makefile 428057 2016-12-07 13:24:56Z gerald $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/434398/logs/tinker-7.1.3_1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=434398 Log: ====>> Building biology/tinker build started at Tue Feb 21 08:55:09 UTC 2017 port directory: /usr/ports/biology/tinker building for: FreeBSD 110armv6-quarterly-job-23 11.0-RELEASE-p5 FreeBSD 11.0-RELEASE-p5 r309692 arm maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q1/biology/tinker/Makefile 428057 2016-12-07 13:24:56Z gerald $ Poudriere version: 3.1.14 Host OSVERSION: 1200018 Jail OSVERSION: 1100122 Job Id: 23 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p5 r309692 UNAME_r=11.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=tinker-7.1.3_1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool MASTERNAME=110armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for tinker-7.1.3_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples OPTIMIZED_FFLAGS=off: compilation optimizations ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/tinker/work HOME=/wrkdirs/usr/ports/biology/tinker/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- HAVE_G2C=yes F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/tinker/work HOME=/wrkdirs/usr/ports/biology/tinker/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49 -B/usr/l ocal/bin" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/tinker" EXAMPLESDIR="share/examples/tinker" DATADIR="share/tinker" WWWDIR="www/tinker" ETCDIR="etc/tinker" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/tinker DOCSDIR=/usr/local/share/doc/tinker EXAMPLESDIR=/usr/local/share/examples/tinker WWWDIR=/usr/local/www/tinker ETCDIR=/usr/local/etc/tinker --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p5 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The tinker port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License tinker accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> tinker-7.1.3_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-23] Installing pkg-1.9.4_1... [110armv6-quarterly-job-23] Extracting pkg-1.9.4_1: .......... done ===> tinker-7.1.3_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of tinker-7.1.3_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The tinker port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License tinker accepted by the user => tinker-7.1.3.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch http://dasher.wustl.edu/tinker/downloads/tinker-7.1.3.tar.gz <snip> a - kpitor.o a - kpitors.o a - kpolar.o a - kpolr.o a - ksolv.o a - kstbnd.o a - kstrbnd.o a - kstrtor.o a - ksttor.o a - ktors.o a - ktorsn.o a - ktortor.o a - ktrtor.o a - kurey.o a - kurybr.o a - kvdw.o a - kvdwpr.o a - kvdws.o a - lattice.o a - lbfgs.o a - light.o a - lights.o a - limits.o a - linmin.o a - makeint.o a - makeref.o a - makexyz.o a - math.o a - maxwell.o a - mdinit.o a - mdrest.o a - mdsave.o a - mdstat.o a - mdstuf.o a - mechanic.o a - merck.o a - merge.o a - minima.o a - molcul.o a - moldyn.o a - molecule.o a - moment.o a - moments.o a - mplpot.o a - mpole.o a - mutant.o a - mutate.o a - nblist.o a - neigh.o a - nextarg.o a - nexttext.o a - nonpol.o a - nose.o a - nspline.o a - nucleo.o a - number.o a - numeral.o a - numgrad.o a - ocvm.o a - omega.o a - opbend.o a - opdist.o a - openend.o a - openmp.o a - optsave.o a - orbital.o a - orbits.o a - orient.o a - orthog.o a - output.o a - overlap.o a - params.o a - paths.o a - pbstuf.o a - pdb.o a - phipsi.o a - picalc.o a - piorbs.o a - pistuf.o a - pitors.o a - pme.o a - pmestuff.o a - pmpb.o a - polar.o a - polgrp.o a - polpot.o a - polymer.o a - potent.o a - potfit.o a - precis.o a - precise.o a - pressure.o a - prmkey.o a - promo.o a - prtdyn.o a - prterr.o a - prtint.o a - prtmol2.o a - prtpdb.o a - prtprm.o a - prtseq.o a - prtxyz.o a - ptable.o a - qmstuf.o a - qrfact.o a - quatfit.o a - random.o a - rattle.o a - readdyn.o a - readgau.o a - readint.o a - readmol.o a - readmol2.o a - readpdb.o a - readprm.o a - readseq.o a - readxyz.o a - refer.o a - replica.o a - resdue.o a - respa.o a - restrn.o a - rgddyn.o a - rgdstep.o a - rigid.o a - ring.o a - rings.o a - rmsfit.o a - rotbnd.o a - rotlist.o a - rotpole.o a - rxnfld.o a - rxnpot.o a - scales.o a - sdstep.o a - search.o a - sequen.o a - server.o a - shakeup.o a - shunt.o a - sigmoid.o a - sizes.o a - sktstuff.o a - socket.o a - solute.o a - sort.o a - square.o a - stodyn.o a - strbnd.o a - strtor.o a - suffix.o a - surface.o a - surfatom.o a - switch.o a - syntrn.o a - tarray.o a - temper.o a - titles.o a - tncg.o a - torphase.o a - torpot.o a - torque.o a - tors.o a - torsions.o a - tortor.o a - tree.o a - trimtext.o a - unitcell.o a - units.o a - uprior.o a - urey.o a - urypot.o a - usage.o a - usolve.o a - valfit.o a - vdw.o a - vdwpot.o a - verlet.o a - version.o a - vibs.o a - virial.o a - volume.o a - warp.o a - xtals.o a - xyzatm.o a - zatom.o a - zclose.o a - zcoord.o ranlib libtinker.a gfortran49 -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49 -B/usr/local/bin -o alchemy.x alchemy.o libtinker.a /usr/local/lib/gcc49/libgfortran.so: undefined reference to `fpgetsticky' collect2: error: ld returned 1 exit status *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/tinker/work/tinker/source *** Error code 1 Stop. make: stopped in /usr/ports/biology/tinker
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