From owner-svn-ports-all@freebsd.org Thu Aug 8 21:05:44 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 8604BB2B9B; Thu, 8 Aug 2019 21:05:44 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 464LWD2yJKz4rh4; Thu, 8 Aug 2019 21:05:44 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 474293146; Thu, 8 Aug 2019 21:05:44 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x78L5if5004760; Thu, 8 Aug 2019 21:05:44 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x78L5hMf004754; Thu, 8 Aug 2019 21:05:43 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201908082105.x78L5hMf004754@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Thu, 8 Aug 2019 21:05:43 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r508406 - in head/science: . py-chainer-chemistry X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/science: . py-chainer-chemistry X-SVN-Commit-Revision: 508406 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 08 Aug 2019 21:05:44 -0000 Author: yuri Date: Thu Aug 8 21:05:43 2019 New Revision: 508406 URL: https://svnweb.freebsd.org/changeset/ports/508406 Log: New port: science/py-chainer-chemistry: Library for deep learning in biology and chemistry Added: head/science/py-chainer-chemistry/ head/science/py-chainer-chemistry/Makefile (contents, props changed) head/science/py-chainer-chemistry/distinfo (contents, props changed) head/science/py-chainer-chemistry/pkg-descr (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Thu Aug 8 21:04:30 2019 (r508405) +++ head/science/Makefile Thu Aug 8 21:05:43 2019 (r508406) @@ -233,6 +233,7 @@ SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chainer + SUBDIR += py-chainer-chemistry SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib Added: head/science/py-chainer-chemistry/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-chainer-chemistry/Makefile Thu Aug 8 21:05:43 2019 (r508406) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +PORTNAME= chainer-chemistry +DISTVERSION= 0.5.0 +CATEGORIES= science biology +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Library for deep learning in biology and chemistry + +LICENSE= MIT + +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}chainer>0:science/py-chainer@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include Added: head/science/py-chainer-chemistry/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-chainer-chemistry/distinfo Thu Aug 8 21:05:43 2019 (r508406) @@ -0,0 +1,3 @@ +TIMESTAMP = 1565289694 +SHA256 (chainer-chemistry-0.5.0.tar.gz) = 12a2c19d4846907cdd2e51eeb65ba21d7012e759c7fed3ddb0ee89f2d239a4f5 +SIZE (chainer-chemistry-0.5.0.tar.gz) = 77660 Added: head/science/py-chainer-chemistry/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/py-chainer-chemistry/pkg-descr Thu Aug 8 21:05:43 2019 (r508406) @@ -0,0 +1,6 @@ +Chainer Chemistry is a deep learning framework (based on Chainer) with +applications in Biology and Chemistry. It supports various state-of-the-art +models (especially GCNN - Graph Convolutional Neural Network) for chemical +property prediction. + +WWW: https://github.com/pfnet-research/chainer-chemistry