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Date:      Mon, 23 Sep 2019 07:48:59 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv7-default][science/molsketch] Failed for molsketch-0.6.0_1 in build
Message-ID:  <201909230748.x8N7mxej040021@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/molsketch/Makefile 507372 2019-07-26 20:46:53Z gerald $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-armv7-default/p512545_s352585/logs/molsketch-0.6.0_1.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p512545_s352585
Log:

=>> Building science/molsketch
build started at Mon Sep 23 07:45:04 UTC 2019
port directory: /usr/ports/science/molsketch
package name: molsketch-0.6.0_1
building for: FreeBSD head-armv7-default-job-14 13.0-CURRENT FreeBSD 13.0-CURRENT 1300047 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/molsketch/Makefile 507372 2019-07-26 20:46:53Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300040
Jail OSVERSION: 1300047
Job Id: 14




!!! Jail is newer than host. (Jail: 1300047, Host: 1300040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for molsketch-0.6.0_1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/molsketch/work/Molsketch-0.6.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/molsketch/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/molsketch/work  HOME=/wrkdirs/usr/ports/science/molsketch/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/molsketch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--

--MAKE_ENV--
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 local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" CMAKE_BUILD_TYPE="release" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molsketch"  EXAMPLESDIR="share/examples/molsketch"  DATADIR="share/molsketch"  WWWDIR="www/molsketch"  ETCDIR="etc/molsketch"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/molsketch DOCSDIR=/usr/local/share/doc/molsketch EXAMPLESDIR=/usr/local/share/examples/molsketch  WWWDIR=/usr/local/www/molsketch ETCDIR=/usr/local/etc/molsketch
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PACKAGES=/packages
DISTDIR=/distfiles
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ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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data seg size           (kbytes, -d)  33554432
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core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
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virtual mem size        (kbytes, -v)  unlimited
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pseudo-terminals                (-p)  unlimited
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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   molsketch-0.6.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[head-armv7-default-job-14] Installing pkg-1.12.0...
[head-armv7-default-job-14] Extracting pkg-1.12.0: .......... done
===>   molsketch-0.6.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of molsketch-0.6.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
<snip>
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed).
=====
Message from trousers-0.3.14_2:

--
To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
=====
Message from dejavu-2.37_1:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
=====
Message from wx30-gtk3-3.0.4_8:

--
===>   NOTICE:

The wx30-gtk3 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   molsketch-0.6.0_1 depends on shared library: libopenbabel.so - found (/usr/local/lib/libopenbabel.so)
===>   Returning to build of molsketch-0.6.0_1
===>   molsketch-0.6.0_1 depends on shared library: libQt5Core.so - not found
===>   Installing existing package /packages/All/qt5-core-5.12.2_2.txz
[head-armv7-default-job-14] Installing qt5-core-5.12.2_2...
[head-armv7-default-job-14] `-- Installing etc_os-release-0.1_2...
[head-armv7-default-job-14] `-- Extracting etc_os-release-0.1_2: . done
[head-armv7-default-job-14] `-- Installing pcre2-10.33...
[head-armv7-default-job-14] `-- Extracting pcre2-10.33: .......... done
[head-armv7-default-job-14] Extracting qt5-core-5.12.2_2: .......... done
===>   molsketch-0.6.0_1 depends on shared library: libQt5Core.so - found (/usr/local/lib/qt5/libQt5Core.so)
===>   Returning to build of molsketch-0.6.0_1
===>   molsketch-0.6.0_1 depends on shared library: libQt5Gui.so - not found
===>   Installing existing package /packages/All/qt5-gui-5.12.2_1.txz
[head-armv7-default-job-14] Installing qt5-gui-5.12.2_1...
[head-armv7-default-job-14] `-- Installing qt5-dbus-5.12.2_1...
[head-armv7-default-job-14] `-- Extracting qt5-dbus-5.12.2_1: .......... done
[head-armv7-default-job-14] `-- Installing qt5-network-5.12.2_2...
[head-armv7-default-job-14] `-- Extracting qt5-network-5.12.2_2: .......... done
[head-armv7-default-job-14] `-- Installing xcb-util-image-0.4.0_1...
[head-armv7-default-job-14] |   `-- Installing xcb-util-0.4.0_2,1...
[head-armv7-default-job-14] |   `-- Extracting xcb-util-0.4.0_2,1: .......... done
[head-armv7-default-job-14] `-- Extracting xcb-util-image-0.4.0_1: .......... done
[head-armv7-default-job-14] `-- Installing xcb-util-keysyms-0.4.0_1...
[head-armv7-default-job-14] `-- Extracting xcb-util-keysyms-0.4.0_1: ......... done
[head-armv7-default-job-14] `-- Installing xcb-util-renderutil-0.3.9_1...
[head-armv7-default-job-14] `-- Extracting xcb-util-renderutil-0.3.9_1: ......... done
[head-armv7-default-job-14] `-- Installing xcb-util-wm-0.4.1_3...
[head-armv7-default-job-14] `-- Extracting xcb-util-wm-0.4.1_3: .......... done
[head-armv7-default-job-14] `-- Installing xdg-utils-1.1.3_1...
[head-armv7-default-job-14] |   `-- Installing xprop-1.2.4...
[head-armv7-default-job-14] |   `-- Extracting xprop-1.2.4: ..... done
[head-armv7-default-job-14] |   `-- Installing xset-1.2.4_3...
[head-armv7-default-job-14] |   | `-- Installing libXmu-1.1.3,1...
[head-armv7-default-job-14] |   | `-- Extracting libXmu-1.1.3,1: .......... done
[head-armv7-default-job-14] |   `-- Extracting xset-1.2.4_3: ..... done
[head-armv7-default-job-14] `-- Extracting xdg-utils-1.1.3_1: .......... done
[head-armv7-default-job-14] Extracting qt5-gui-5.12.2_1: .......... done
===>   molsketch-0.6.0_1 depends on shared library: libQt5Gui.so - found (/usr/local/lib/qt5/libQt5Gui.so)
===>   Returning to build of molsketch-0.6.0_1
===>   molsketch-0.6.0_1 depends on shared library: libQt5Network.so - found (/usr/local/lib/qt5/libQt5Network.so)
===>   molsketch-0.6.0_1 depends on shared library: libQt5PrintSupport.so - not found
===>   Installing existing package /packages/All/qt5-printsupport-5.12.2_1.txz
[head-armv7-default-job-14] Installing qt5-printsupport-5.12.2_1...
[head-armv7-default-job-14] `-- Installing qt5-widgets-5.12.2_1...
[head-armv7-default-job-14] `-- Extracting qt5-widgets-5.12.2_1: .......... done
[head-armv7-default-job-14] Extracting qt5-printsupport-5.12.2_1: .......... done
===>   molsketch-0.6.0_1 depends on shared library: libQt5PrintSupport.so - found (/usr/local/lib/qt5/libQt5PrintSupport.so)
===>   Returning to build of molsketch-0.6.0_1
===>   molsketch-0.6.0_1 depends on shared library: libQt5Svg.so - not found
===>   Installing existing package /packages/All/qt5-svg-5.12.2_1.txz
[head-armv7-default-job-14] Installing qt5-svg-5.12.2_1...
[head-armv7-default-job-14] Extracting qt5-svg-5.12.2_1: .......... done
===>   molsketch-0.6.0_1 depends on shared library: libQt5Svg.so - found (/usr/local/lib/qt5/libQt5Svg.so)
===>   Returning to build of molsketch-0.6.0_1
===>   molsketch-0.6.0_1 depends on shared library: libQt5Widgets.so - found (/usr/local/lib/qt5/libQt5Widgets.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for molsketch-0.6.0_1
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/molsketch/work/.build
CMake Deprecation Warning at CMakeLists.txt:3 (cmake_policy):
  The OLD behavior for policy CMP0005 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at CMakeLists.txt:4 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is Clang 8.0.1
-- The CXX compiler identification is Clang 8.0.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using Qt5. Use option "-D FORCEQt4=TRUE" to switch to Qt4.
-- ======= Welcome to Molsketch build =======
-- Sources in: /wrkdirs/usr/ports/science/molsketch/work/Molsketch-0.6.0
-- Installation settings and corresponding cmake variables (use "-D <variableName>=<value>" to change):
--     "Global prefix": MSK_PREFIX = /usr/local
--     "Executable destination dir": MSK_INSTALL_BINS = /usr/local/bin
--     "Headers destination dir": MSK_INSTALL_INCLUDES = /usr/local/include
--     "Documentation destination dir": MSK_INSTALL_DOCS = /usr/local/share/doc/molsketch
--     "Libraries (64bit) destination dir": MSK_INSTALL_LIBS64 = /usr/local/lib/molsketch
--     "Libraries (32bit) destination dir": MSK_INSTALL_LIBS = /usr/local/lib/molsketch
--     "Build OpenBabel interface": MSK_OBABELIFACE = true
--     "Build static application": MSK_STATIC_LIB = false
-- Found PkgConfig: pkgconf (found version "1.6.3") 
-- Checking for module 'openbabel-2.0'
--   Found openbabel-2.0, version 2.4.1
-- Querying include dir: /usr/local/include/openbabel-2.0
-- OpenBabel include dir: /usr/local/include/openbabel-2.0
-- OpenBabel include dir2: /usr/local/include/openbabel-2.0
-- OpenBabel include dir3: /usr/local/include/openbabel-2.0
-- Found OpenBabel2: openbabel
-- Found OpenBabel Trunk with graphsym.h
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_CXX_FLAGS_DEBUG
    CMAKE_C_FLAGS_DEBUG
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/science/molsketch/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for molsketch-0.6.0_1
[1/119] cd /wrkdirs/usr/ports/science/molsketch/work/.build/libmolsketch && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/molsketch/work/.build/libmolsketch/CMakeFiles/molsketch_LIB_autogen.dir/AutogenInfo.cmake Release
FAILED: libmolsketch/CMakeFiles/molsketch_LIB_autogen libmolsketch/molsketch_LIB_autogen/mocs_compilation.cpp 
cd /wrkdirs/usr/ports/science/molsketch/work/.build/libmolsketch && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/molsketch/work/.build/libmolsketch/CMakeFiles/molsketch_LIB_autogen.dir/AutogenInfo.cmake Release
Fatal error 'thread 0xf416b500 exits with resources held!' at line 321 in file /usr/local/poudriere/jails/head-armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 0)
qemu: uncaught target signal 6 (Abort trap) - core dumped
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/molsketch



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