Date: Sun, 17 Dec 2017 02:18:14 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 111armv6-quarterly][science/py-scipy] Failed for py36-scipy-0.19.0_3 in configure Message-ID: <201712170218.vBH2IEUK006357@beefy15.nyi.freebsd.org>
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Maintainer: python@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2017Q4/science/py-scipy/Makefile 449591 2017-09-10 20:55:38Z gerald $ Log URL: http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/456459/logs/py36-scipy-0.19.0_3.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=456459 Log: =>> Building science/py-scipy build started at Sun Dec 17 02:17:37 UTC 2017 port directory: /usr/ports/science/py-scipy package name: py36-scipy-0.19.0_3 building for: FreeBSD 111armv6-quarterly-job-08 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm maintained by: python@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q4/science/py-scipy/Makefile 449591 2017-09-10 20:55:38Z gerald $ Poudriere version: 3.2.3-16-g77e43413 Host OSVERSION: 1200052 Jail OSVERSION: 1101001 Job Id: 08 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere LOCALBASE=/usr/local LIBEXECPREFIX=/usr/local/libexec/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIERE_VERSION=3.2.3-16-g77e43413 P_PYTHON_MAJOR_VER=2 HOME=/root USER=root SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=111armv6-quarterly PWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p/pool P_PORTS_FEATURES=DEPENDS_ARGS SELECTED_OPTIONS OLDPWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p POUDRIERE_BUILD_TYPE=bulk PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/111armv6-quarterly/ref SAVED_TERM= STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.1-RELEASE-p6 UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001 OSVERSION=1101001 ABI_FILE=/usr/lib/crt1.o UNAME_m=arm UNAME_p=armv6 SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV=PKG_NOTES=depends_args PKG_NOTE_depends_args=PYTHON_VERSION=python3.6 FLAVOR= DEPENDS_ARGS=PYTHON_VERSION=python3.6 MAKE_ARGS=PYTHON_VERSION=python3.6 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py36-scipy-0.19.0_3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work HOME=/wrkdirs/usr/ports/science/py-scipy/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work HOME=/wrkdirs/usr/ports/science/py-scipy/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLA GS=" -shared -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/py36-scipy" EXAMPLESDIR="share/examples/py36-scipy" DATADIR="share/py36-scipy" WWWDIR="www/py36-scipy" ETCDIR="etc/py36-scipy" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-scipy DOCSDIR=/usr/local/share/doc/py36-scipy EXAMPLESDIR=/usr/local/share/examples/py36-scipy WWWDIR=/usr/local/www/py36-scipy ETCDIR=/usr/local/etc/py36-scipy --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=11.1-RELEASE-p6 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py36-scipy-0.19.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [111armv6-quarterly-job-08] Installing pkg-1.10.1... [111armv6-quarterly-job-08] Extracting pkg-1.10.1: .......... done ===> py36-scipy-0.19.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-scipy-0.19.0_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-scipy-0.19.0_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-scipy-0.19.0_3 for building => SHA256 Checksum OK for scipy-0.19.0.zip. => SHA256 Checksum OK for scipy-ref-0.19.0.pdf. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-scipy-0.19.0_3 for building ===> Extracting for py36-scipy-0.19.0_3 => SHA256 Checksum OK for scipy-0.19.0.zip. => SHA256 Checksum OK for scipy-ref-0.19.0.pdf. /nxb-bin/usr/bin/sed -i.bak -e "s|) IF(| .AND. |" /wrkdirs/usr/ports/science/py-scipy/work/scipy-0.19.0/scipy/odr/odrpack/d_lpkbls.f =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py36-scipy-0.19.0_3 =========================================================================== =======================<phase: build-depends >============================ ===> py36-scipy-0.19.0_3 depends on file: /usr/local/lib/python3.6/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py36-numpy-1.13.1_2,1.txz [111armv6-quarterly-job-08] Installing py36-numpy-1.13.1_2,1... [111armv6-quarterly-job-08] `-- Installing blas-3.5.0_3... [111armv6-quarterly-job-08] | `-- Installing gcc6-6.4.0_2... [111armv6-quarterly-job-08] | | `-- Installing binutils-2.28,1... [111armv6-quarterly-job-08] | | `-- Installing gettext-runtime-0.19.8.1_1... [111armv6-quarterly-job-08] | | | `-- Installing indexinfo-0.2.6... [111armv6-quarterly-job-08] | | | `-- Extracting indexinfo-0.2.6: .... done [111armv6-quarterly-job-08] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [111armv6-quarterly-job-08] | | `-- Extracting binutils-2.28,1: .......... done [111armv6-quarterly-job-08] | | `-- Installing gmp-6.1.2... [111armv6-quarterly-job-08] | | `-- Extracting gmp-6.1.2: .......... done [111armv6-quarterly-job-08] | | `-- Installing mpc-1.0.3... [111armv6-quarterly-job-08] | | `-- Installing mpfr-3.1.6... [111armv6-quarterly-job-08] | | `-- Extracting mpfr-3.1.6: .......... done [111armv6-quarterly-job-08] | | `-- Extracting mpc-1.0.3: ...... done [111armv6-quarterly-job-08] | `-- Extracting gcc6-6.4.0_2: .......... done [111armv6-quarterly-job-08] `-- Extracting blas-3.5.0_3: ....... done [111armv6-quarterly-job-08] `-- Installing cblas-1.0_7... [111armv6-quarterly-job-08] `-- Extracting cblas-1.0_7: ......... done [111armv6-quarterly-job-08] `-- Installing lapack-3.5.0_3... [111armv6-quarterly-job-08] `-- Extracting lapack-3.5.0_3: .......... done [111armv6-quarterly-job-08] `-- Installing py36-setuptools-36.2.2... [111armv6-quarterly-job-08] | `-- Installing python36-3.6.2_1... [111armv6-quarterly-job-08] | | `-- Installing libffi-3.2.1_1... [111armv6-quarterly-job-08] | | `-- Extracting libffi-3.2.1_1: .......... done [111armv6-quarterly-job-08] | | `-- Installing readline-7.0.3... [111armv6-quarterly-job-08] | | `-- Extracting readline-7.0.3: .......... done [111armv6-quarterly-job-08] | `-- Extracting python36-3.6.2_1: .......... done [111armv6-quarterly-job-08] `-- Extracting py36-setuptools-36.2.2: .......... done [111armv6-quarterly-job-08] `-- Installing suitesparse-4.0.2_7... [111armv6-quarterly-job-08] | `-- Installing openblas-0.2.20_1,1... [111armv6-quarterly-job-08] | `-- Extracting openblas-0.2.20_1,1: ......... done [111armv6-quarterly-job-08] `-- Extracting suitesparse-4.0.2_7: .......... done [111armv6-quarterly-job-08] Extracting py36-numpy-1.13.1_2,1: .......... done Message from gcc6-6.4.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_7: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python36-3.6.2_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py36-gdbm py36-sqlite3 databases/py36-sqlite3 py36-tkinter x11-toolkits/py36-tkinter =========================================================================== Message from py36-setuptools-36.2.2: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-scipy-0.19.0_3 depends on file: /usr/local/lib/python3.6/site-packages/numpy/core/numeric.py - found ===> Returning to build of py36-scipy-0.19.0_3 ===> py36-scipy-0.19.0_3 depends on executable: gfortran6 - found ===> py36-scipy-0.19.0_3 depends on package: py36-setuptools>0 - found ===> py36-scipy-0.19.0_3 depends on file: /usr/local/bin/python3.6 - found ===> py36-scipy-0.19.0_3 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py36-scipy-0.19.0_3 setup.py:323: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates warnings.warn("Unrecognized setuptools command, proceeding with " Traceback (most recent call last): File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module> from . import multiarray ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv" During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<string>", line 1, in <module> File "setup.py", line 416, in <module> setup_package() File "setup.py", line 396, in setup_package from numpy.distutils.core import setup File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module> from . import add_newdocs File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module> from numpy.lib import add_newdoc File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module> from .type_check import * File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module> import numpy.core.numeric as _nx File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module> raise ImportError(msg) ImportError: Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. If you're working with a numpy git repo, try `git clean -xdf` (removes all files not under version control). Otherwise reinstall numpy. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv" *** Error code 1 Stop. make: stopped in /usr/ports/science/py-scipy
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