Date: Wed, 29 Jan 2014 20:15:43 GMT From: pkg-fallout@FreeBSD.org To: maho@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [REL - head-amd64-default][science/libghemical] Failed for libghemical-3.0.0_1 in configure Message-ID: <201401292015.s0TKFhZN024950@beefy2.isc.freebsd.org>
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Maintainer: maho@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/libghemical/Makefile 331644 2013-10-26 00:52:33Z gerald $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-01-29_19h07m40s/logs/libghemical-3.0.0_1.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-01-29_19h07m40s Log: ====>> Building science/libghemical build started at Wed Jan 29 20:15:03 UTC 2014 port directory: /usr/ports/science/libghemical building for: FreeBSD head-amd64-default-job-23 11.0-CURRENT FreeBSD 11.0-CURRENT r260904 amd64 maintained by: maho@FreeBSD.org Makefile ident: $FreeBSD: head/science/libghemical/Makefile 331644 2013-10-26 00:52:33Z gerald $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=1100005 UNAME_v=FreeBSD 11.0-CURRENT r260904 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref PKG_EXT=txz tpid=96906 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=libghemical-3.0.0_1 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" PKG_CONFIG=pkgconf MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing" CPP="cpp46" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INST ALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for libghemical-3.0.0_1 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> libghemical-3.0.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.5.txz Installing pkg-1.2.5... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of libghemical-3.0.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by libghemical-3.0.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by libghemical-3.0.0_1 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by libghemical-3.0.0_1 for building ===> Extracting for libghemical-3.0.0_1 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libghemical-3.0.0_1 =========================================================================== =======================<phase: build-depends >============================ ===> libghemical-3.0.0_1 depends on executable: obabel - not found ===> Verifying install for obabel in /usr/ports/science/openbabel ===> Installing existing package /packages/All/openbabel-2.3.2.txz Installing openbabel-2.3.2...Installing libxml2-2.8.0_3... done Installing python27-2.7.6_1...Installing gettext-0.18.3.1... done done done ==== Note that some of the standard modules are provided as separate ports since they require extra dependencies: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Install them as needed. ==== ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on executable: intltool-update - not found ===> Verifying install for intltool-update in /usr/ports/textproc/intltool ===> Installing existing package /packages/All/intltool-0.50.2.txz Installing intltool-0.50.2...Installing p5-XML-Parser-2.41_1...Installing expat-2.1.0... done Installing perl5-5.16.3_6...Removing /usr/local/etc/perl5_version... Done. Creating /usr/local/etc/perl5_version... Done. Removing stale symlinks from /usr/bin... Skipping /usr/bin/perl Skipping /usr/bin/perl5 Done. Creating various symlinks in /usr/bin... Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5 Done. done done done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on executable: ld - found ===> libghemical-3.0.0_1 depends on executable: pkgconf - not found ===> Verifying install for pkgconf in /usr/ports/devel/pkgconf ===> Installing existing package /packages/All/pkgconf-0.9.4.txz Installing pkgconf-0.9.4... done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz Installing gmake-3.82_1... done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on executable: gcc46 - not found ===> Verifying install for gcc46 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.6.4.txz Installing gcc-4.6.4...Installing binutils-2.24... done Installing gcc-ecj-4.5... done Installing gmp-5.1.3... done Installing mpc-1.0.2...Installing mpfr-3.1.2... done done done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_1 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto ===> Installing existing package /packages/All/glproto-1.4.17.txz Installing glproto-1.4.17... done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto ===> Installing existing package /packages/All/dri2proto-2.8.txz Installing dri2proto-2.8... done ===> Returning to build of libghemical-3.0.0_1 =========================================================================== =======================<phase: lib-depends >============================ ===> libghemical-3.0.0_1 depends on shared library: libintl.so - found ===> libghemical-3.0.0_1 depends on shared library: libGL.so - not found ===> Verifying for libGL.so in /usr/ports/graphics/libGL ===> Installing existing package /packages/All/libGL-9.1.7.txz Installing libGL-9.1.7...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1... done Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done done done Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done done Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done done Installing libdrm-2.4.50...Installing libpciaccess-0.13.2...Installing pciids-20131225... done done done done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on shared library: mpqc - not found ===> Verifying install for mpqc in /usr/ports/science/mpqc ===> Installing existing package /packages/All/mpqc-2.3.1_17.txz Installing mpqc-2.3.1_17...Installing libint-1.1.4... done Installing lapack-3.4.2_1...Installing blas-3.4.2_1... done done done ===> Returning to build of libghemical-3.0.0_1 ===> libghemical-3.0.0_1 depends on shared library: f2c - not found ===> Verifying install for f2c in /usr/ports/lang/f2c ===> Installing existing package /packages/All/f2c-20060810_3.txz Installing f2c-20060810_3... done ===> Returning to build of libghemical-3.0.0_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libghemical-3.0.0_1 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/configure configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking build system type... amd64-portbld-freebsd11.0 checking host system type... amd64-portbld-freebsd11.0 checking for gcc... gcc46 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc46 accepts -g... yes checking for gcc46 option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of gcc46... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether g++46 accepts -g... yes checking dependency style of g++46... gcc3 checking how to run the C preprocessor... cpp46 checking how to run the C++ preprocessor... g++46 -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by gcc46... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for ar... /usr/local/bin/ar checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from gcc46 object... ok checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++46 accepts -g... (cached) yes checking dependency style of g++46... (cached) gcc3 checking how to run the C++ preprocessor... g++46 -E checking for objdir... .libs checking if gcc46 supports -fno-rtti -fno-exceptions... no checking for gcc46 option to produce PIC... -fPIC -DPIC checking if gcc46 PIC flag -fPIC -DPIC works... yes checking if gcc46 static flag -static works... yes checking if gcc46 supports -c -o file.o... yes checking if gcc46 supports -c -o file.o... (cached) yes checking whether the gcc46 linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++46... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the g++46 linker (/usr/local/bin/ld) supports shared libraries... yes checking for g++46 option to produce PIC... -fPIC -DPIC checking if g++46 PIC flag -fPIC -DPIC works... yes checking if g++46 static flag -static works... yes checking if g++46 supports -c -o file.o... yes checking if g++46 supports -c -o file.o... (cached) yes checking whether the g++46 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.50.2 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/bin/perl checking for perl >= 5.8.1... 5.16.3 checking for XML::Parser... ok checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... Segmentation fault (core dumped) no *** Could not run SC test program, checking why... *** The test program compiled, but did not run. This usually means *** that the run-time linker is not finding SC or finding the wrong *** version of SC. If it is not finding SC, you'll need to set your *** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point *** to the installed location Also, make sure you have run ldconfig if that *** is required on your system *** *** If you have an old version installed, it is best to remove it, although *** you may also be able to get things to work by modifying LD_LIBRARY_PATH *** *** If you have a RedHat 5.0 system, you should remove the SC package that *** came with the system with the command *** *** rpm --erase --nodeps sc sc-devel configure: error: Cannot find proper SC version ===> Script "configure" failed unexpectedly. Please report the problem to maho@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/science/libghemical ===> Cleaning for libghemical-3.0.0_1
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