Date: Sun, 23 Oct 2022 07:52:36 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: e93e2de8ba1c - main - science/py-chempy: Correct and add dependencies Message-ID: <202210230752.29N7qaxM028942@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=e93e2de8ba1ca3245108e7be62c1dc97ec31bfd1 commit e93e2de8ba1ca3245108e7be62c1dc97ec31bfd1 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2022-10-23 06:19:54 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2022-10-23 07:52:32 +0000 science/py-chempy: Correct and add dependencies --- science/py-chempy/Makefile | 37 ++++++++++++++++--------------------- 1 file changed, 16 insertions(+), 21 deletions(-) diff --git a/science/py-chempy/Makefile b/science/py-chempy/Makefile index 3974b69fbb29..a31810ade744 100644 --- a/science/py-chempy/Makefile +++ b/science/py-chempy/Makefile @@ -1,6 +1,7 @@ PORTNAME= chempy DISTVERSION= 0.8.2 -CATEGORIES= science python +PORTREVISION= 1 +CATEGORIES= science python # chemistry MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,9 +12,9 @@ WWW= https://github.com/bjodah/chempy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= \ - ${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.3:math/py-matplotlib@${PY_FLAVOR} \ + ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}PuLP>=1.6.8:math/py-PuLP@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyneqsys>=0.5.5:math/py-pyneqsys@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyodesys>=0.14.1:math/py-pyodesys@${PY_FLAVOR} \ @@ -21,26 +22,18 @@ PY_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}quantities>=0.12.1:science/py-quantities@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sym>=0.3.4:math/py-sym@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} -TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-flakes>0:devel/py-pytest-flakes@${PY_FLAVOR} -USES= python:3.7+ pytest -USE_PYTHON= distutils autoplist +USES= python:3.8+ +USE_PYTHON= distutils autoplist pytest NO_ARCH= yes -# https://github.com/bjodah/chempy/issues/198 -PYTEST_BROKEN_TESTS= test_get_native__a_substance_no_composition \ - test_balance_stoichiometry__underdetermined \ - test_balance_stoichiometry__very_underdetermined \ - test_balance_stoichiometry__underdetermined__canoncial \ - test_balance_stoichiometry__substances__underdetermined \ - test_balance_stoichiometry__duplicates - CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}pymol # https://github.com/schrodinger/pymol-open-source/issues/100 OPTIONS_DEFINE= EXTRAS @@ -48,10 +41,12 @@ OPTIONS_DEFAULT= EXTRAS EXTRAS_DESC= Install optional dependencies for additional functionality EXTRAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}bokeh>=0.11.1:www/py-bokeh@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.2:devel/py-pycodeexport@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.3:devel/py-pycompilation@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.1:math/py-pygslodeiv2@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.1:math/py-pyodeint@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}bokeh>=0.13.0:www/py-bokeh@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.3:devel/py-pycodeexport@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.12:devel/py-pycompilation@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.4:math/py-pygslodeiv2@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.4:math/py-pyodeint@${PY_FLAVOR} + # TODO pycvodes>=0.14.0, pykinsol>=0.1.6 .include <bsd.port.mk>
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