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Date:      Fri, 22 Mar 2019 23:53:54 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-amd64-default][science/py-phono3py] Failed for py36-phono3py-1.13.3.27_1 in build
Message-ID:  <201903222353.x2MNrstK024512@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/py-phono3py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-amd64-default/p496405_s345355/logs/py36-phono3py-1.13.3.27_1.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p496405_s345355
Log:

=>> Building science/py-phono3py
build started at Fri Mar 22 23:53:29 UTC 2019
port directory: /usr/ports/science/py-phono3py
package name: py36-phono3py-1.13.3.27_1
building for: FreeBSD head-amd64-default-job-04 13.0-CURRENT FreeBSD 13.0-CURRENT 1300017 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-phono3py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1300017
Job Id: 04




!!! Jail is newer than host. (Jail: 1300017, Host: 1300009) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-phono3py-1.13.3.27_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-amd64-default-job-04] Installing pkg-1.10.5_5...
[head-amd64-default-job-04] Extracting pkg-1.10.5_5: .......... done
===>   py36-phono3py-1.13.3.27_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-phono3py-1.13.3.27_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_1 for building
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_1 for building
===>  Extracting for py36-phono3py-1.13.3.27_1
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py36-phono3py-1.13.3.27_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-numpy>0 - not found
===>   Installing existing package /packages/All/py36-numpy-1.16.1,1.txz
[head-amd64-default-job-04] Installing py36-numpy-1.16.1,1...
[head-amd64-default-job-04] `-- Installing blas-3.5.0_5...
<snip>
===>   Returning to build of py36-phono3py-1.13.3.27_1
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-matplotlib>0 - not found
===>   Installing existing package /packages/All/py36-matplotlib-2.1.2_6.txz
[head-amd64-default-job-04] Installing py36-matplotlib-2.1.2_6...
[head-amd64-default-job-04] `-- Installing fontconfig-2.12.6,1...
[head-amd64-default-job-04] |   `-- Installing expat-2.2.6_1...
[head-amd64-default-job-04] |   `-- Extracting expat-2.2.6_1: .......... done
[head-amd64-default-job-04] |   `-- Installing freetype2-2.9.1...
[head-amd64-default-job-04] |   `-- Extracting freetype2-2.9.1: .......... done
[head-amd64-default-job-04] `-- Extracting fontconfig-2.12.6,1: .......... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
[head-amd64-default-job-04] `-- Installing png-1.6.36...
[head-amd64-default-job-04] `-- Extracting png-1.6.36: .......... done
[head-amd64-default-job-04] `-- Installing py36-cycler-0.10.0...
[head-amd64-default-job-04] `-- Extracting py36-cycler-0.10.0: .......... done
[head-amd64-default-job-04] `-- Installing py36-dateutil-2.7.3...
[head-amd64-default-job-04] `-- Extracting py36-dateutil-2.7.3: .......... done
[head-amd64-default-job-04] `-- Installing py36-pyparsing-2.3.1...
[head-amd64-default-job-04] `-- Extracting py36-pyparsing-2.3.1: .......... done
[head-amd64-default-job-04] `-- Installing py36-pytz-2018.9,1...
[head-amd64-default-job-04] `-- Extracting py36-pytz-2018.9,1: .......... done
[head-amd64-default-job-04] `-- Installing py36-tkinter-3.6.8_6...
[head-amd64-default-job-04] |   `-- Installing tcl86-8.6.9_1...
[head-amd64-default-job-04] |   `-- Extracting tcl86-8.6.9_1: .......... done
[head-amd64-default-job-04] |   `-- Installing tk86-8.6.9_1...
[head-amd64-default-job-04] |   | `-- Installing libX11-1.6.7,1...
[head-amd64-default-job-04] |   |   `-- Installing libXau-1.0.9...
[head-amd64-default-job-04] |   |   `-- Extracting libXau-1.0.9: .......... done
[head-amd64-default-job-04] |   |   `-- Installing libXdmcp-1.1.2_2...
[head-amd64-default-job-04] |   |   | `-- Installing xorgproto-2018.4...
[head-amd64-default-job-04] |   |   | `-- Extracting xorgproto-2018.4: .......... done
[head-amd64-default-job-04] |   |   `-- Extracting libXdmcp-1.1.2_2: ......... done
[head-amd64-default-job-04] |   |   `-- Installing libxcb-1.13.1...
[head-amd64-default-job-04] |   |   | `-- Installing libpthread-stubs-0.4...
[head-amd64-default-job-04] |   |   | `-- Extracting libpthread-stubs-0.4: .... done
[head-amd64-default-job-04] |   |   | `-- Installing libxml2-2.9.8...
[head-amd64-default-job-04] |   |   | `-- Extracting libxml2-2.9.8: .......... done
[head-amd64-default-job-04] |   |   `-- Extracting libxcb-1.13.1: .......... done
[head-amd64-default-job-04] |   | `-- Extracting libX11-1.6.7,1: .......... done
[head-amd64-default-job-04] |   | `-- Installing libXScrnSaver-1.2.3_2...
[head-amd64-default-job-04] |   |   `-- Installing libXext-1.3.3_3,1...
[head-amd64-default-job-04] |   |   `-- Extracting libXext-1.3.3_3,1: .......... done
[head-amd64-default-job-04] |   | `-- Extracting libXScrnSaver-1.2.3_2: .......... done
[head-amd64-default-job-04] |   | `-- Installing libXft-2.3.2_3...
[head-amd64-default-job-04] |   |   `-- Installing libXrender-0.9.10_2...
[head-amd64-default-job-04] |   |   `-- Extracting libXrender-0.9.10_2: .......... done
[head-amd64-default-job-04] |   | `-- Extracting libXft-2.3.2_3: .......... done
[head-amd64-default-job-04] |   `-- Extracting tk86-8.6.9_1: .......... done
[head-amd64-default-job-04] `-- Extracting py36-tkinter-3.6.8_6: ........ done
[head-amd64-default-job-04] `-- Installing py36-tornado-5.1.1...
[head-amd64-default-job-04] `-- Extracting py36-tornado-5.1.1: .......... done
[head-amd64-default-job-04] Extracting py36-matplotlib-2.1.2_6: .......... done
Message from freetype2-2.9.1:

The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed).
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-matplotlib>0 - found
===>   Returning to build of py36-phono3py-1.13.3.27_1
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-phonopy>=1.13.2 - not found
===>   Installing existing package /packages/All/py36-phonopy-1.13.2.107_1.txz
[head-amd64-default-job-04] Installing py36-phonopy-1.13.2.107_1...
[head-amd64-default-job-04] `-- Installing py36-yaml-3.13...
[head-amd64-default-job-04] `-- Extracting py36-yaml-3.13: .......... done
[head-amd64-default-job-04] Extracting py36-phonopy-1.13.2.107_1: .......... done
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-phonopy>=1.13.2 - found
===>   Returning to build of py36-phono3py-1.13.3.27_1
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-yaml>0 - found
===>   py36-phono3py-1.13.3.27_1 depends on file: /usr/local/include/lapacke.h - not found
===>   Installing existing package /packages/All/lapacke-3.5.0_6.txz
[head-amd64-default-job-04] Installing lapacke-3.5.0_6...
[head-amd64-default-job-04] Extracting lapacke-3.5.0_6: .......... done
===>   py36-phono3py-1.13.3.27_1 depends on file: /usr/local/include/lapacke.h - found
===>   Returning to build of py36-phono3py-1.13.3.27_1
===>   py36-phono3py-1.13.3.27_1 depends on executable: cython-3.6 - not found
===>   Installing existing package /packages/All/py36-cython-0.29.txz
[head-amd64-default-job-04] Installing py36-cython-0.29...
[head-amd64-default-job-04] Extracting py36-cython-0.29: .......... done
===>   py36-phono3py-1.13.3.27_1 depends on executable: cython-3.6 - found
===>   Returning to build of py36-phono3py-1.13.3.27_1
===>   py36-phono3py-1.13.3.27_1 depends on package: py36-setuptools>0 - found
===>   py36-phono3py-1.13.3.27_1 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py36-phono3py-1.13.3.27_1 depends on shared library: libomp.so - found (/usr/lib/libomp.so)
===>   py36-phono3py-1.13.3.27_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-phono3py-1.13.3.27_1
setuptools is used.
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-phono3py-1.13.3.27_1
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py
copying phono3py/file_IO.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py
copying phono3py/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py
copying phono3py/version.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/create_supercells.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/translate_settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/phono3py_argparse.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/create_force_constants.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/triplets_info.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/show_log.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
copying phono3py/cui/phono3py_yaml.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/cui
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/other
copying phono3py/other/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/other
copying phono3py/other/alm_wrapper.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/other
copying phono3py/other/isotope.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/other
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon
copying phono3py/phonon/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon
copying phono3py/phonon/solver.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon
creating build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/collision_matrix.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/displacement_fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/gruneisen.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/interaction.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/imag_self_energy.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/frequency_shift.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/joint_dos.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity_RTA.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/triplets.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/phonon3
running build_ext
building 'phono3py._lapackepy' extension
creating build/temp.freebsd-13.0-CURRENT-amd64-3.6
creating build/temp.freebsd-13.0-CURRENT-amd64-3.6/c
creating build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_lapackepy.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/_lapackepy.c:38:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_array.c:36:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_utils.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS
cc -shared -fstack-protector -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/_lapackepy.o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/dynmat.o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonon.o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonoc_array.o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/phonoc_utils.o build/temp.freebsd-13.0-CURRENT-amd64-3.6/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython3.6m -o build/lib.freebsd-13.0-CURRENT-amd64-3.6/phono3py/_lapackepy.so -lgomp -lopenblas
ld: error: unable to find library -lgomp
cc: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'cc' failed with exit status 1
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-phono3py



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