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Date:      Sun, 2 Dec 2018 10:39:25 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-amd64-default][math/deal.ii] Failed for deal.II-9.0.1 in configure
Message-ID:  <201812021039.wB2AdPp4007895@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/math/deal.ii/Makefile 481957 2018-10-13 05:56:12Z yuri $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-amd64-default/p486312_s341354/logs/deal.II-9.0.1.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p486312_s341354
Log:

=>> Building math/deal.ii
build started at Sun Dec  2 10:38:07 UTC 2018
port directory: /usr/ports/math/deal.ii
package name: deal.II-9.0.1
building for: FreeBSD head-amd64-default-job-12 13.0-CURRENT FreeBSD 13.0-CURRENT 1300004 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/math/deal.ii/Makefile 481957 2018-10-13 05:56:12Z yuri $
Poudriere version: 3.2.8
Host OSVERSION: 1300002
Jail OSVERSION: 1300004
Job Id: 12




!!! Jail is newer than host. (Jail: 1300004, Host: 1300002) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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===> The following configuration options are available for deal.II-9.0.1:
     ADOLC=off: Compile with ADOL-C
     ARPACK=off: Compile with Arpack and PArpack (only with MPI, LAPACK)
     GSL=on: Compile with gsl
     LAPACK=on: Compile with LAPACK for matrix operations
     MPI=off: MPI (Message Passing Interface) support
     NETCDF=off: Compile with Netcdf (only with MPI)
     OPENCASCADE=off: Compile with OpenCascade
     PETSC=off: Compile with Petsc (only with MPI)
     SCALAPACK=off: Compile with ScaLAPACK (only with MPI)
     SLEPC=off: Compile with SLEPC (only with PETSC)
     SUNDIALS=on: Compile with SUNDIALS
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
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 " CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc7  -L/usr/local/lib/gcc7 -B/usr/local/bin -fstack-protector -L/usr/local/lib " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/deal.II"  EXAMPLESDIR="share/examples/deal.II"  DATADIR="share/deal.II"  WWWDIR="www/deal.II"  ETCDIR="etc/deal.II"
--End PLIST_SUB--

--SUB_LIST--
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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   deal.II-9.0.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-amd64-default-job-12] Installing pkg-1.10.5_5...
[head-amd64-default-job-12] Extracting pkg-1.10.5_5: .......... done
===>   deal.II-9.0.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of deal.II-9.0.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by deal.II-9.0.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by deal.II-9.0.1 for building
=> SHA256 Checksum OK for dealii-dealii-v9.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by deal.II-9.0.1 for building
<snip>
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN - Success
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FEATURES
-- Performing Test DEAL_II_HAVE_CXX11_FEATURES - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER
-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER - Success
-- DEAL_II_WITH_CXX14 successfully set up
-- DEAL_II_WITH_CXX17 successfully set up
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/checks/check_02_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Failed
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Failed
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD
-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Looking for jn
-- Looking for jn - found
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_1_cuda.cmake
-- DEAL_II_WITH_CUDA is set to off.
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_1_lapack.cmake
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE  
-- Found BLAS: /usr/local/lib/libgoto2.so  
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Failed
-- Performing Test gcc_s_LIBRARY
-- Performing Test gcc_s_LIBRARY - Success
-- Performing Test gcc_LIBRARY
-- Performing Test gcc_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Failed
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
--   LAPACK_LIBRARIES: /usr/local/lib/libgoto2.so;/usr/local/lib/libgoto2.so;/usr/local/lib/libgoto2.so;m;gcc_s;gcc;m;gcc_s;gcc;c;gcc_s;gcc
--   LAPACK_LINKER_FLAGS: -Wl,-rpath=/usr/local/lib/gcc7  -L/usr/local/lib/gcc7 -B/usr/local/bin -fstack-protector -L/usr/local/lib
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Success
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_1_mpi.cmake
-- DEAL_II_WITH_MPI is set to off.
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_1_threads.cmake
-- Found TBB_LIBRARY
-- TBB_DEBUG_LIBRARY not found! Call:
--     FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib lib64 lib)
-- Found TBB_INCLUDE_DIR
--   TBB_VERSION: 9.0
--   TBB_LIBRARIES: /usr/local/lib/libtbb.so
--   TBB_INCLUDE_DIRS: /usr/local/include
--   TBB_USER_INCLUDE_DIRS: /usr/local/include
-- Found TBB
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- DEAL_II_WITH_THREADS successfully set up with external dependencies.
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") 
--   ZLIB_VERSION: 1.2.11
--   ZLIB_LIBRARIES: /usr/lib/libz.so
--   ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
-- 
-- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.0.1/cmake/configure/configure_2_boost.cmake
-- Boost version: 1.68.0
-- Found the following Boost libraries:
--   iostreams
--   serialization
--   system
--   thread
--   regex
--   chrono
--   date_time
--   atomic
--   BOOST_VERSION: 1.68.0
--   BOOST_LIBRARIES: /usr/local/lib/libboost_iostreams.so;/usr/local/lib/libboost_serialization.so;/usr/local/lib/libboost_system.so;/usr/local/lib/libboost_thread.so;/usr/local/lib/libboost_regex.so;/usr/local/lib/libboost_chrono.so;/usr/local/lib/libboost_date_time.so;/usr/local/lib/libboost_atomic.so
--   BOOST_INCLUDE_DIRS: /usr/local/include
--   BOOST_USER_INCLUDE_DIRS: /usr/local/include
-- Found BOOST
-- Performing Test BOOST_IOSTREAMS_USABLE
-- Performing Test BOOST_IOSTREAMS_USABLE - Success
-- Performing Test BOOST_SERIALIZATION_USABLE
-- Performing Test BOOST_SERIALIZATION_USABLE - Failed
-- The externally provided Boost.Serialization library failed to pass a crucial test. 
Therefore, the bundled boost package is used. 
The configured testing project can be found at /wrkdirs/usr/ports/math/deal.ii/work/.build/cmake/configure/TestBoostBug
-- DEAL_II_WITH_BOOST has unmet external dependencies.
CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE):
  

  Could not find the boost library!

  The externally provided Boost.Serialization library failed to pass a
  crucial test.Please ensure that a suitable boost library is installed on
  your computer.

  If the library is not at a default location, either provide some hints for
  autodetection,

      $ BOOST_DIR="..." cmake <...>
      $ cmake -DBOOST_DIR="..." <...>

  or set the relevant variables by hand in ccmake.

  Alternatively you may choose to compile the bundled library of boost by
  setting DEAL_II_ALLOW_BUNDLED=on or DEAL_II_FORCE_BUNDLED_BOOST=on.

Call Stack (most recent call first):
  cmake/macros/macro_configure_feature.cmake:269 (FEATURE_ERROR_MESSAGE)
  cmake/configure/configure_2_boost.cmake:231 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:124 (VERBOSE_INCLUDE)


-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/math/deal.ii/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/math/deal.ii/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1

Stop.
make: stopped in /usr/ports/math/deal.ii



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