From nobody Mon Apr 27 15:39:29 2026 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4g476944Q8z6bDpP for ; Mon, 27 Apr 2026 15:39:29 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R13" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id 4g47693Mcjz3bP3 for ; Mon, 27 Apr 2026 15:39:29 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1777304369; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=qPEUr1t3tTHGXgVxQ89o4EvJxtdY+rsxkTVYvL0OB7I=; b=FDh8vqSxjHQpbcCqXH6FyTONJtk2FOmrIu7eynpr7nel0xggNte+x33adliXTVOtFb90RD jrUgcwvXRx5AMobOFi01BX2cKPMzebA8NjsxvJ7aBGZ6NXXDA1lQxTAIFpejQr5Ubiag82 Y43pzUa41xyAWuDxoehu2JonG3mt+OUY9npljsup67X0K2hBqyyWmnUEe7IkbdpjgE4MLC qIHlAtkWMYDm7Zly22+PzLaYnHq1HCh1Hoi9YrSy2GPwkbZ3dgzyxS+X1+iy8oSJuw2BZe +bXqfbe0AV5GiUTnJhD3Cwdb9o96Ierg6Dk0ntmAxGEGOILQBvUKDENgWx3tbA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1777304369; a=rsa-sha256; cv=none; b=t5lWE0Ek4nAx8aXu9uxSXfuXtEtx65K7ud3BdiIuNnzsirOsIHNrIy6p8se7WTp5yqE4bA P2UvkTBnb0XcZs6y4Sv4X8P6/c6njJQh4pel9bX663A7miKArFNUMuvf2kzOVOHPxNUZnd 8eoxB5r79a8VaRoyQJXsvi+5yVp9fjWmeBtGIw3cDzb5llcgqkEDyrm4jZNdxz2BE9zjp3 aNSxwFCJVT9P9MwwASYGaRRnhSLj4FXQsj2Bqa1GGo/3N7BwOryYuV/4krmRu7DfIxWxeE NuuA9xschtdK4owsgnxftX2aiDExwyOLnwBRLfJYFLBsUQl1wcckCz/JB1KYkQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1777304369; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=qPEUr1t3tTHGXgVxQ89o4EvJxtdY+rsxkTVYvL0OB7I=; b=Nh143CeIfh2Ni38fjvlnkyRx0wpMoUCgZFHfTpygHINESkLOaZAL0CPYvbazwN4+bZEODD e3ANGWYWm0zqiCLPGyBowcUEWBmzEJMMqMGqCjQhebdEX4Jda8KjLVj1c3/nFV45obFEpf SwFQQ5weatq6PwDwkehtE7mlFVT6nx+LAqPKOkBN0RVnzzBh7Q12abDmlr36S1DHSTHlfw HoqTNtRhuVqrc/c2VGNJlsr+Z917CvQhrJNtzRfFFqhNtYfICZr9p98Jy47faqD3vrQ53s mGlqBQ/1Dv7ZVIuPMEt6XENJ/wFM7EfIOWPVAt/g04Fp61Z8Otz+Oa4ba1ERiw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4g47692JFjz1C0B for ; Mon, 27 Apr 2026 15:39:29 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from git (uid 1279) (envelope-from git@FreeBSD.org) id 3feb4 by gitrepo.freebsd.org (DragonFly Mail Agent v0.13+ on gitrepo.freebsd.org); Mon, 27 Apr 2026 15:39:29 +0000 To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Jason W. Bacon Subject: git: 6a27a4d51a75 - main - biology/py-deeptools: Update to 3.5.6 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 6a27a4d51a75654d87b9d9336c841883738ca825 Auto-Submitted: auto-generated Date: Mon, 27 Apr 2026 15:39:29 +0000 Message-Id: <69ef8331.3feb4.472a8ebf@gitrepo.freebsd.org> The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=6a27a4d51a75654d87b9d9336c841883738ca825 commit 6a27a4d51a75654d87b9d9336c841883738ca825 Author: Jason W. Bacon AuthorDate: 2026-04-27 15:35:51 +0000 Commit: Jason W. Bacon CommitDate: 2026-04-27 15:35:51 +0000 biology/py-deeptools: Update to 3.5.6 Numerous fixes and enhancements since 3.5.2 Changes: https://github.com/deeptools/deepTools/releases --- biology/py-deeptools/Makefile | 18 +++++++++++------- biology/py-deeptools/distinfo | 6 +++--- 2 files changed, 14 insertions(+), 10 deletions(-) diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile index e83d82db1e00..64cda435743f 100644 --- a/biology/py-deeptools/Makefile +++ b/biology/py-deeptools/Makefile @@ -1,9 +1,9 @@ PORTNAME= deepTools -DISTVERSION= 3.5.2 -PORTREVISION= 3 +DISTVERSION= 3.5.6 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= deeptools-${DISTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= User-friendly tools for exploring deep-sequencing data @@ -12,17 +12,21 @@ WWW= https://github.com/deeptools/deepTools LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.17.0:science/py-scipy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.5.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pysam>=0.14.0:biology/py-pysam@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}py2bit>=0.3.0:biology/py-py2bit@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}py2bit>=0.2.0:biology/py-py2bit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpydoc>=0.5:textproc/py-numpydoc@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pyBigWig>=0.3.18:biology/py-pybigwig@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyBigWig>=0.2.1:biology/py-pybigwig@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.9:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}deeptoolsintervals>=0.1.8:biology/py-deeptoolsintervals@${PY_FLAVOR} USES= python -USE_PYTHON= autoplist concurrent distutils +USE_PYTHON= autoplist concurrent pep517 + +NO_ARCH= yes .include diff --git a/biology/py-deeptools/distinfo b/biology/py-deeptools/distinfo index d9f91ee6f45e..7bfa323c9994 100644 --- a/biology/py-deeptools/distinfo +++ b/biology/py-deeptools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1687035894 -SHA256 (deepTools-3.5.2.tar.gz) = 9367f9037b1822b7d69d5abaf47ca25bf0e5dc4cb8be85bd55b6f63c90781941 -SIZE (deepTools-3.5.2.tar.gz) = 203152 +TIMESTAMP = 1777290929 +SHA256 (deeptools-3.5.6.tar.gz) = 2daf06abc8cf2df42f7e0ecacb3784ee95de1db4dd887f69f22a29f27e202369 +SIZE (deeptools-3.5.6.tar.gz) = 199316