From nobody Wed Oct 11 12:31:59 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4S5Bwb2G95z4xL1L; Wed, 11 Oct 2023 12:31:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4S5Bwb1fzjz4XPL; Wed, 11 Oct 2023 12:31:59 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697027519; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ypQq6p1c3VWkkwPlO3J4+70HfDnBKtmVerIKyNisONk=; b=JPj4O8BDEpHrqiOyROTWxLS9v9XGdytshu0PMK2Df0j5jNjrYLyzl3Ib/B4t9UK5QiKnr7 /scWXYxvwXbR6Eh3YuJNR/XAanmAF3OqYNYBzILWP6WBbYVIE1xe5xOqreqQeh2V6I3y/F IwXuJh4l2ZwZjtebcxoBReiMsbZv0osuehfcDNfJDGq9rv4LFvHRjEn48v+/z2SKSLuVhS gC4GsOzrWHzjl1MCV3MEGqiDi6Yg6+Bh2waUoybJHuCnRYrJ3zVhPcbG0gnIuPAcjMFCh0 gtRtbYAgrSLANI/qjq+vriCtsS8RPfiZK8Ezzpr9UWJURfVkHuadyBDkuohUdQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1697027519; a=rsa-sha256; cv=none; b=u+p1916UzqlWWfHgPslTqJ6mpO8lMYQ4QExOFQ+eubrsa5UEvrpwTfseSukM+sFvUFafmR MIqkavYgUExFH6TSZLHlbAkRetLR8WEFp+/5Ul0Jz4yCubAsLnX7khIwt94vfnOM5qk3zh wjMwFhAwfduP6f/UioYwJbJtkt9zwzA23ZUWByM7sbtdIqSj/K3X0NR2le0k1hdAXiVFPg PdoA0+0FzjPKv95QiMzRCWFlR2HdpQhVnEVtr5eFJCOQHCytlXQvjnCAEB31QCD6jEDSaD dPL+Ehy5toU2HWf32XNGxXPi6JHElni2j94diJvhi3qM+ToxLwxPJ7nROk+vtA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697027519; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ypQq6p1c3VWkkwPlO3J4+70HfDnBKtmVerIKyNisONk=; b=fW0AeGmJLVnvlPg8Xc4XHxu/hX5HZu5mtD5s16vRVeJ9pC22qp1PaeQs+4+H7ZeqBlldgx yrEj3NO5G4MbRu+KRr6Z/DyMDuN3/dBcV4xlq8LlXciBLfQdpnKhcou3xAIVqSysD2Jfjn lpY0w+gGcryx2FvXy1xZYLCXwvjpVjY4hqgcSPqqr6C9+sHyvAhsoLMKogcyF9EMM5u9RN DGFhwm/pDK5MrcjEXHXmCJJHuP8HMXPH7hzW+VfCkLBko8u+hNdeLBG77JyLw9BfjyktMP BhX6o8OeMaTooXjIImM2AjXD7yRtSCjoYHmxrzegLq/uR/XCmthQQCzS3lYJUQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4S5Bwb0jV7z6C1; Wed, 11 Oct 2023 12:31:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 39BCVx3C000561; Wed, 11 Oct 2023 12:31:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 39BCVx9d000558; Wed, 11 Oct 2023 12:31:59 GMT (envelope-from git) Date: Wed, 11 Oct 2023 12:31:59 GMT Message-Id: <202310111231.39BCVx9d000558@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 2650106a619a - main - biology/bifrost: Update to 1.3.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2650106a619a359d18835139e863a3ff45bb3b2e Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2650106a619a359d18835139e863a3ff45bb3b2e commit 2650106a619a359d18835139e863a3ff45bb3b2e Author: Jason W. Bacon AuthorDate: 2023-10-11 12:29:33 +0000 Commit: Jason W. Bacon CommitDate: 2023-10-11 12:31:57 +0000 biology/bifrost: Update to 1.3.0 Performance and memory efficiency improvements A few new features Note: New index format incompatible with previous versions Changes: https://github.com/pmelsted/bifrost/releases Reported by: portscout --- biology/bifrost/Makefile | 3 +-- biology/bifrost/distinfo | 6 +++--- biology/bifrost/pkg-plist | 2 +- 3 files changed, 5 insertions(+), 6 deletions(-) diff --git a/biology/bifrost/Makefile b/biology/bifrost/Makefile index 197f58a662dc..35c43c9b7e5b 100644 --- a/biology/bifrost/Makefile +++ b/biology/bifrost/Makefile @@ -1,7 +1,6 @@ PORTNAME= bifrost DISTVERSIONPREFIX= v -DISTVERSION= 1.2.1 -PORTREVISION= 1 +DISTVERSION= 1.3.0 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/bifrost/distinfo b/biology/bifrost/distinfo index f92944f13d87..0a993415bfa1 100644 --- a/biology/bifrost/distinfo +++ b/biology/bifrost/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1688397139 -SHA256 (pmelsted-bifrost-v1.2.1_GH0.tar.gz) = fe93080ef3ea71ff009fc206b5c17dd40fbfd18293000621a83d7d947dfedf1a -SIZE (pmelsted-bifrost-v1.2.1_GH0.tar.gz) = 905438 +TIMESTAMP = 1696948677 +SHA256 (pmelsted-bifrost-v1.3.0_GH0.tar.gz) = 621dd590a28dd61347d319ee5320718ebac3c9da356b058b8776677ce463c197 +SIZE (pmelsted-bifrost-v1.3.0_GH0.tar.gz) = 349405 diff --git a/biology/bifrost/pkg-plist b/biology/bifrost/pkg-plist index 7d555618743c..9b4f28081aa5 100644 --- a/biology/bifrost/pkg-plist +++ b/biology/bifrost/pkg-plist @@ -38,9 +38,9 @@ include/bifrost/UnitigIterator.hpp include/bifrost/UnitigIterator.tcc include/bifrost/UnitigMap.hpp include/bifrost/UnitigMap.tcc +include/bifrost/fastmod.h include/bifrost/getRSS.h include/bifrost/kseq.h -include/bifrost/libdivide.h include/bifrost/libpopcnt.h include/bifrost/minHashIterator.hpp include/bifrost/roaring.h