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Date:      Thu, 28 Feb 2019 09:02:59 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv6-default][science/py-spglib] Failed for py27-spglib-1.12.0 in build
Message-ID:  <201902280902.x1S92xL4089034@beefy8.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/science/py-spglib/Makefile 491680 2019-01-31 04:47:08Z yuri $
Log URL:        http://beefy8.nyi.freebsd.org/data/head-armv6-default/p493733_s344489/logs/py27-spglib-1.12.0.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p493733_s344489
Log:

=>> Building science/py-spglib
build started at Thu Feb 28 09:02:03 UTC 2019
port directory: /usr/ports/science/py-spglib
package name: py27-spglib-1.12.0
building for: FreeBSD head-armv6-default-job-18 13.0-CURRENT FreeBSD 13.0-CURRENT 1300013 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-spglib/Makefile 491680 2019-01-31 04:47:08Z yuri $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1300013
Job Id: 18




!!! Jail is newer than host. (Jail: 1300013, Host: 1300009) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-spglib-1.12.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv6-default-job-18] Installing pkg-1.10.5_5...
[head-armv6-default-job-18] Extracting pkg-1.10.5_5: .......... done
===>   py27-spglib-1.12.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-spglib-1.12.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-spglib-1.12.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-spglib-1.12.0 for building
=> SHA256 Checksum OK for spglib-1.12.0.post3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-spglib-1.12.0 for building
===>  Extracting for py27-spglib-1.12.0
=> SHA256 Checksum OK for spglib-1.12.0.post3.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-spglib-1.12.0
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-spglib-1.12.0 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.16.1,1.txz
[head-armv6-default-job-18] Installing py27-numpy-1.16.1,1...
[head-armv6-default-job-18] `-- Installing blas-3.5.0_5...
[head-armv6-default-job-18] |   `-- Installing gcc8-8.2.0_4...
[head-armv6-default-job-18] |   | `-- Installing binutils-2.32,1...
[head-armv6-default-job-18] |   |   `-- Installing gettext-runtime-0.19.8.1_2...
[head-armv6-default-job-18] |   |   | `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-18] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-18] |   |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[head-armv6-default-job-18] |   | `-- Extracting binutils-2.32,1: .......... done
[head-armv6-default-job-18] |   | `-- Installing gmp-6.1.2_1...
[head-armv6-default-job-18] |   | `-- Extracting gmp-6.1.2_1: .......... done
[head-armv6-default-job-18] |   | `-- Installing mpc-1.1.0_2...
[head-armv6-default-job-18] |   |   `-- Installing mpfr-4.0.2...
[head-armv6-default-job-18] |   |   `-- Extracting mpfr-4.0.2: .......... done
[head-armv6-default-job-18] |   | `-- Extracting mpc-1.1.0_2: ......... done
[head-armv6-default-job-18] |   `-- Extracting gcc8-8.2.0_4: .......... done
[head-armv6-default-job-18] `-- Extracting blas-3.5.0_5: ....... done
[head-armv6-default-job-18] `-- Installing cblas-1.0_10...
[head-armv6-default-job-18] `-- Extracting cblas-1.0_10: ......... done
[head-armv6-default-job-18] `-- Installing lapack-3.5.0_6...
[head-armv6-default-job-18] `-- Extracting lapack-3.5.0_6: .......... done
[head-armv6-default-job-18] `-- Installing py27-setuptools-40.8.0...
[head-armv6-default-job-18] |   `-- Installing python27-2.7.15...
[head-armv6-default-job-18] |   | `-- Installing libffi-3.2.1_3...
[head-armv6-default-job-18] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-armv6-default-job-18] |   | `-- Installing readline-7.0.5...
[head-armv6-default-job-18] |   | `-- Extracting readline-7.0.5: .......... done
[head-armv6-default-job-18] |   `-- Extracting python27-2.7.15: .......... done
[head-armv6-default-job-18] `-- Extracting py27-setuptools-40.8.0: .......... done
[head-armv6-default-job-18] `-- Installing suitesparse-5.2.0_2...
[head-armv6-default-job-18] |   `-- Installing metis-5.1.0_7...
[head-armv6-default-job-18] |   `-- Extracting metis-5.1.0_7: .......... done
[head-armv6-default-job-18] |   `-- Installing openblas-0.2.20_7,1...
[head-armv6-default-job-18] |   `-- Extracting openblas-0.2.20_7,1: ......... done
[head-armv6-default-job-18] `-- Extracting suitesparse-5.2.0_2: .......... done
[head-armv6-default-job-18] Extracting py27-numpy-1.16.1,1: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.15:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py27-spglib-1.12.0 depends on package: py27-numpy>0 - found
===>   Returning to build of py27-spglib-1.12.0
===>   py27-spglib-1.12.0 depends on package: py27-setuptools>0 - found
===>   py27-spglib-1.12.0 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-spglib-1.12.0
/usr/local/lib/python2.7/site-packages/setuptools/dist.py:475: UserWarning: Normalizing '1.12.0-3' to '1.12.0.post3'
  normalized_version,
setuptools is used.
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py27-spglib-1.12.0
/usr/local/lib/python2.7/site-packages/setuptools/dist.py:475: UserWarning: Normalizing '1.12.0-3' to '1.12.0.post3'
  normalized_version,
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-13.0-CURRENT-arm-2.7
creating build/lib.freebsd-13.0-CURRENT-arm-2.7/spglib
copying spglib/__init__.py -> build/lib.freebsd-13.0-CURRENT-arm-2.7/spglib
copying spglib/spglib.py -> build/lib.freebsd-13.0-CURRENT-arm-2.7/spglib
running build_ext
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 147, in <module>
    tests_require=['nose'])
  File "/usr/local/lib/python2.7/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python2.7/distutils/core.py", line 151, in setup
    dist.run_commands()
  File "/usr/local/lib/python2.7/distutils/dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python2.7/distutils/command/build.py", line 127, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python2.7/distutils/dist.py", line 971, in run_command
    cmd_obj.ensure_finalized()
  File "/usr/local/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized
    self.finalize_options()
  File "setup.py", line 26, in finalize_options
    import numpy
  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module>
    from . import core
  File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 47, in <module>
    raise ImportError(msg)
ImportError: 

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
Here is how to proceed:
- If you're working with a numpy git repository, try `git clean -xdf`
  (removes all files not under version control) and rebuild numpy.
- If you are simply trying to use the numpy version that you have installed:
  your installation is broken - please reinstall numpy.
- If you have already reinstalled and that did not fix the problem, then:
  1. Check that you are using the Python you expect (you're using /usr/local/bin/python2.7),
     and that you have no directories in your PATH or PYTHONPATH that can
     interfere with the Python and numpy versions you're trying to use.
  2. If (1) looks fine, you can open a new issue at
     https://github.com/numpy/numpy/issues.  Please include details on:
     - how you installed Python
     - how you installed numpy
     - your operating system
     - whether or not you have multiple versions of Python installed
     - if you built from source, your compiler versions and ideally a build log

     Note: this error has many possible causes, so please don't comment on
     an existing issue about this - open a new one instead.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-spglib



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