From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Jun 20 05:10:03 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 4ED47106566C for ; Sat, 20 Jun 2009 05:10:03 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 264728FC0A for ; Sat, 20 Jun 2009 05:10:03 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n5K5A2X3027262 for ; Sat, 20 Jun 2009 05:10:03 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n5K5A2Rx027261; Sat, 20 Jun 2009 05:10:02 GMT (envelope-from gnats) Resent-Date: Sat, 20 Jun 2009 05:10:02 GMT Resent-Message-Id: <200906200510.n5K5A2Rx027261@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen Heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 5DE771065782 for ; Sat, 20 Jun 2009 05:06:44 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 319A98FC1A for ; Sat, 20 Jun 2009 05:06:44 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id n5K56hMP041653 for ; Sat, 20 Jun 2009 05:06:43 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id n5K56h83041652; Sat, 20 Jun 2009 05:06:43 GMT (envelope-from nobody) Message-Id: <200906200506.n5K56h83041652@www.freebsd.org> Date: Sat, 20 Jun 2009 05:06:43 GMT From: Wen Heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/135856: [NEW PORT]biology/rubygem-bioruby:Integrated environment for Bioinformatics written in Ruby X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 20 Jun 2009 05:10:03 -0000 >Number: 135856 >Category: ports >Synopsis: [NEW PORT]biology/rubygem-bioruby:Integrated environment for Bioinformatics written in Ruby >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sat Jun 20 05:10:02 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-CURRENT >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: BioRuby project aims to implement integrated environment for Bioinformatics by using Ruby. WWW: http://bioruby.org/ ( This port actually is the same ruby application as biology/ruby-bio, shall we repocopy it from biology/ruby-bio ? ) >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # rubygem-bioruby # rubygem-bioruby/Makefile # rubygem-bioruby/distinfo # rubygem-bioruby/pkg-descr # echo c - rubygem-bioruby mkdir -p rubygem-bioruby > /dev/null 2>&1 echo x - rubygem-bioruby/Makefile sed 's/^X//' >rubygem-bioruby/Makefile << '530bb826a2696c4ebf934c5c36589c09' X# New ports collection makefile for: rubygem-bioruby X# Date created: 20 June, 2009 X# Whom: Wen Heping X# X# $FreeBSD$ X# X XPORTNAME= bioruby XPORTVERSION= 1.3.0 XCATEGORIES= devel rubygems XMASTER_SITES= RF XDISTNAME= bio-${PORTVERSION} X XMAINTAINER= wenheping@gmail.com XCOMMENT= Integrated environment for Bioinformatics written in Ruby X XPLIST_FILES= bin/bioruby \ X bin/br_biofetch.rb \ X bin/br_bioflat.rb \ X bin/br_biogetseq.rb \ X bin/br_pmfetch.rb X XUSE_RUBY= yes XUSE_RUBYGEMS= yes XRUBYGEM_AUTOPLIST= yes XGEM_NAME= ${DISTNAME} X X.include 530bb826a2696c4ebf934c5c36589c09 echo x - rubygem-bioruby/distinfo sed 's/^X//' >rubygem-bioruby/distinfo << '3614f29ee230b76aefbc16d0b067511c' XMD5 (rubygem/bio-1.3.0.gem) = 23d28f07311b769265ba4a764716cd13 XSHA256 (rubygem/bio-1.3.0.gem) = e2441f967e1dfbfff6eb57d81e148976290f3ce78b234a71d88a94c7343644cf XSIZE (rubygem/bio-1.3.0.gem) = 914944 3614f29ee230b76aefbc16d0b067511c echo x - rubygem-bioruby/pkg-descr sed 's/^X//' >rubygem-bioruby/pkg-descr << 'b49810fb549b553b81e8bd98fe34c74e' XBioRuby project aims to implement integrated environment for XBioinformatics by using Ruby. X XWWW: http://bioruby.org/ b49810fb549b553b81e8bd98fe34c74e exit >Release-Note: >Audit-Trail: >Unformatted: